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Releases: DEploid-dev/DEploid-r

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v0.5.6 CRAN

v0.5.6 CRAN Latest
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@shajoezhu shajoezhu released this 23 Dec 16:02
v0.5.6
fab73c3
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Learn about vigilant mode.
  • Deprecate extractVCF function, changing deploid cpp code, use the latest vcf
Assets 2
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v0.5.4 cran

v0.5.4 cran

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@shajoezhu shajoezhu released this 19 Oct 07:40
v0.5.4
e93ab4d
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Learn about vigilant mode. 
Merge pull request #74 from DEploid-dev/68_new_version

68 new version
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v0.5.0

v0.5.0 Pre-release
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@shajoezhu shajoezhu released this 18 May 07:27
v0.5.0
09d8b40

  • Major change

  • Bump version to v0.5.0, use large amount new code for DEploid-IBD, not enabled yet

  • Minor change

  • Update import htmlwidget and rmarkdown

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v0.4.4

v0.4.4

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@shajoezhu shajoezhu released this 01 Sep 06:29
v0.4.4
d6c8a99

DEploid_0.4.4

Major changes

  • None

Bugs

  • None

Improvements

  • Include outliers in plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
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v0.4.3

v0.4.3

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@shajoezhu shajoezhu released this 09 Aug 21:49
v0.4.3
f9fc306

This version is exactly the same as the previous two versions v0.4.2 and v0.4.2.pre. Had some troubles on CRAN regarding compiling on solaris operating system.

DEploid_0.4.2

Major changes

  • None

Bugs

  • None

Improvements

  • Include MCMC steps as dEploid function output
  • Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
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v0.4.2.pre

v0.4.2.pre Pre-release
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@shajoezhu shajoezhu released this 09 Aug 21:47
v0.4.2.pre
2bfb9d3

DEploid_0.4.2

Major changes

  • None

Bugs

  • None

Improvements

  • Include MCMC steps as dEploid function output
  • Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
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V0.4.2

V0.4.2 Pre-release
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@shajoezhu shajoezhu released this 09 Aug 21:46
v0.4.2
2bfb9d3

DEploid_0.4.2

Major changes

  • None

Bugs

  • None

Improvements

  • Include MCMC steps as dEploid function output
  • Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
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Version 0.4.1

Version 0.4.1

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@shajoezhu shajoezhu released this 24 Jul 22:27
v0.4.1
e094eae

DEploid_0.4.1

Major changes

  • Implemented IBD method to infer the proportions first.
  • Updated DEploid C++ code to the most updated version.

Bugs

  • None

Improvements

  • Plotting alternative allele count vs reference allele counts with colours.
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Version 0.3.2

Version 0.3.2

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@shajoezhu shajoezhu released this 08 Dec 12:14
0.3.2
8d838be

First release on CRAN at
https://cran.r-project.org/web/packages/DEploid/index.html

Major improvement

  • reproducible code across platforms
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Version 0.3.1

Version 0.3.1

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@shajoezhu shajoezhu released this 14 Oct 16:32
0.3.1
01060c8

First release for DEploid R version, using source code from [https://github.com/mcveanlab/DEploid/releases/tag/v0.3-beta.1](DEploid v0.3-beta.1)

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