Skip to content

Updates to sea ice bgc registry and history fields #6644

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 3 commits into from
Oct 10, 2024
Merged

Updates to sea ice bgc registry and history fields #6644

Show file tree
Hide file tree
Changes from 2 commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
af5d1e3
Updates to bgc registry and history fields
njeffery Sep 24, 2024
712d71f
Zero aerosol diagnostics to prevent NaNs during bgc only runs
njeffery Sep 26, 2024
468866d
Make bld files consistent with Registry
jonbob Oct 9, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
57 changes: 48 additions & 9 deletions components/mpas-seaice/cime_config/buildnml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -924,22 +924,41 @@ def buildnml(case, caseroot, compname):
lines.append(' <var name="bergLatentHeatFlux"/>')

if ice_bgc == 'ice_bgc':
lines.append(' <var name="totalVerticalBiologyIce"/>')
lines.append(' <var name="totalChlorophyll"/>')
lines.append(' <var name="primaryProduction"/>')
lines.append(' <var name="bioShortwaveFlux"/>')
lines.append(' <var name="netBrineHeight"/>')
lines.append(' <var name="newlyFormedIce"/>')
lines.append(' <var name="snowThicknessChange"/>')
lines.append(' <var name="verticalAlgaeIceCell"/>')
lines.append(' <var name="totalVerticalDiatomIce"/>')
lines.append(' <var name="totalVerticalSmallPlanktonIce"/>')
lines.append(' <var name="totalVerticalAlgaeCarbonIce"/>')
lines.append(' <var name="totalVerticalNitrateIce"/>')
lines.append(' <var name="totalVerticalAmmoniumIce"/>')
lines.append(' <var name="totalVerticalSilicateIce"/>')
lines.append(' <var name="totalVerticalProteinsIce"/>')
lines.append(' <var name="totalVerticalDOCLabileIce"/>')
lines.append(' <var name="totalVerticalHumicsIce"/>')
lines.append(' <var name="totalVerticalDissolvedIronIce"/>')
lines.append(' <var name="totalVerticalParticulateIronIce"/>')
lines.append(' <var name="totalVerticalBCIce"/>')
lines.append(' <var name="totalVerticalBCSnow"/>')
lines.append(' <var name="totalVerticalDustIce"/>')
lines.append(' <var name="totalVerticalDustSnow"/>')
lines.append(' <var name="totalVerticalDissolvedIronSnow"/>')
lines.append(' <var name="verticalAlgaeTotalCarbonIceCell"/>')
lines.append(' <var name="verticalDOCLabileIceCell"/>')
lines.append(' <var name="verticalDONIceCell"/>')
lines.append(' <var name="verticalDICIceCell"/>')
lines.append(' <var name="verticalNitrateIceCell"/>')
lines.append(' <var name="verticalSilicateIceCell"/>')
lines.append(' <var name="verticalAmmoniumIceCell"/>')
lines.append(' <var name="verticalDMSIceCell"/>')
lines.append(' <var name="verticalDMSPdIceCell"/>')
lines.append(' <var name="verticalNonreactiveIceCell"/>')
lines.append(' <var name="verticalHumicsIceCell"/>')
lines.append(' <var name="verticalDissolvedIronIceCell"/>')
lines.append(' <var name="verticalBCTotalIceCell"/>')
lines.append(' <var name="verticalDustTotalIceCell"/>')
lines.append(' <var name="verticalBCTotalSnowCell"/>')
lines.append(' <var name="verticalDustTotalSnowCell"/>')
lines.append(' <var name="iceEnthalpyCell"/>')
lines.append(' <var name="iceSalinityCell"/>')
lines.append(' <var name="oceanBioFluxes"/>')
Expand Down Expand Up @@ -999,15 +1018,35 @@ def buildnml(case, caseroot, compname):
lines.append(' <var name="snowAlbedoCell"/>')
lines.append(' <var name="bareIceAlbedoCell"/>')
lines.append(' <var name="pondAlbedoCell"/>')
lines.append(' <var name="verticalAlgaeIceCell"/>')
lines.append(' <var name="totalVerticalDiatomIce"/>')
lines.append(' <var name="totalVerticalSmallPlanktonIce"/>')
lines.append(' <var name="totalVerticalAlgaeCarbonIce"/>')
lines.append(' <var name="totalVerticalNitrateIce"/>')
lines.append(' <var name="totalVerticalAmmoniumIce"/>')
lines.append(' <var name="totalVerticalSilicateIce"/>')
lines.append(' <var name="totalVerticalProteinsIce"/>')
lines.append(' <var name="totalVerticalDOCLabileIce"/>')
lines.append(' <var name="totalVerticalHumicsIce"/>')
lines.append(' <var name="totalVerticalDissolvedIronIce"/>')
lines.append(' <var name="totalVerticalParticulateIronIce"/>')
lines.append(' <var name="totalVerticalBCIce"/>')
lines.append(' <var name="totalVerticalBCSnow"/>')
lines.append(' <var name="totalVerticalDustIce"/>')
lines.append(' <var name="totalVerticalDustSnow"/>')
lines.append(' <var name="totalVerticalDissolvedIronSnow"/>')
lines.append(' <var name="verticalAlgaeTotalCarbonIceCell"/>')
lines.append(' <var name="verticalDOCLabileIceCell"/>')
lines.append(' <var name="verticalDONIceCell"/>')
lines.append(' <var name="verticalDICIceCell"/>')
lines.append(' <var name="verticalNitrateIceCell"/>')
lines.append(' <var name="verticalSilicateIceCell"/>')
lines.append(' <var name="verticalAmmoniumIceCell"/>')
lines.append(' <var name="verticalDMSIceCell"/>')
lines.append(' <var name="verticalDMSPdIceCell"/>')
lines.append(' <var name="verticalNonreactiveIceCell"/>')
lines.append(' <var name="verticalHumicsIceCell"/>')
lines.append(' <var name="verticalDissolvedIronIceCell"/>')
lines.append(' <var name="verticalBCTotalIceCell"/>')
lines.append(' <var name="verticalDustTotalIceCell"/>')
lines.append(' <var name="verticalBCTotalSnowCell"/>')
lines.append(' <var name="verticalDustTotalSnowCell"/>')
lines.append(' <var name="iceEnthalpyCell"/>')
lines.append(' <var name="iceSalinityCell"/>')
lines.append(' <var name="oceanBioFluxes"/>')
Expand Down
Loading