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<code>hmmalign</code> with <code>--outformat a2m</code> discards padding

Status: Open.

#345 In EddyRivasLab/hmmer;

· althonos opened on Dec 23, 2025

Add a --version flag

Status: Open.

#343 In EddyRivasLab/hmmer;

· tseemann opened on Dec 15, 2025

Out-of-bound access in <code>SetConsensus</code> in the case of degenerate symbols.

Status: Open.

#341 In EddyRivasLab/hmmer;

· althonos opened on Aug 14, 2025

Filtering by domain E-value in Jackhmmer

Status: Open.

#340 In EddyRivasLab/hmmer;

· Augustin-Zidek opened on Aug 12, 2025

Possible undefined behavior in impl_sse/o7_oprofile.c

Status: Open.

#339 In EddyRivasLab/hmmer;

· ssijaric-nv opened on Jul 18, 2025

HMMER version 3.5

Status: Open.

#338 In EddyRivasLab/hmmer;

· Augustin-Zidek opened on May 23, 2025

Question about HMMER output and LTRs

Status: Open.

#337 In EddyRivasLab/hmmer;

· BioFalcon opened on Jan 30, 2025

Error while installing hmmer with Cygwin64

Status: Open.

#336 In EddyRivasLab/hmmer;

· phantasm-21 opened on Jan 16, 2025

HTTPS for release artifacts on eddylab.org

Status: Open.

#335 In EddyRivasLab/hmmer;

· xunjieli opened on Dec 20, 2024

dropping columns that have only one sequence in it can fail at the N-terminus.

Status: Open.

#331 In EddyRivasLab/hmmer;

· danielhhaft opened on Aug 9, 2024

clarification: why is phmmer/jackhmmer better than blastp/psi-blast?

Status: Open.

#327 In EddyRivasLab/hmmer;

· JLSteenwyk opened on Jul 14, 2024

Extracting sequences from nhmmer <code>--tblout</code>

Status: Open.

#325 In EddyRivasLab/hmmer;

· Euphrasiologist opened on May 3, 2024