Update script spliceai_annotation_file.py#1186
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| # For other species we select the canonical transcripts and the gene name is in xref | ||
| sql_select = """ | ||
| SELECT DISTINCT g.stable_id,s.name,t.seq_region_strand,t.seq_region_start,t.seq_region_end, | ||
| SELECT DISTINCT g.stable_id,g.stable_id,s.name,t.seq_region_strand,t.seq_region_start,t.seq_region_end, |
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Selection of g.stable_id occurs twice, which then affects the col indexing later on, i.e. L81 strand = row[3] and other row[x] selections
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As discussed, the duplicate key is to maintain the same number of columns.
ainefairbrother
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Nov 28, 2025
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Replaced by #1215 |
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