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The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 14

  2. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 8 1

  3. OmeSliCC OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    Python 7 1

  4. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 6

  5. sparks sparks Public

    Jupyter Notebook 6 1

  6. warpAnnotations warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    MATLAB 5

Repositories

Showing 10 of 140 repositories
  • muvis-align Public

    Testing stitching of multiview-stitcher

    FrancisCrickInstitute/muvis-align’s past year of commit activity
    Python 1 0 0 0 Updated May 3, 2025
  • asf-tools Public

    ASF Tools command line tool-kit for ASF operations.

    FrancisCrickInstitute/asf-tools’s past year of commit activity
    Python 0 MIT 0 8 0 Updated May 2, 2025
  • introduction-to-image-analysis Public Forked from RMS-DAIM/introduction-to-image-analysis
    FrancisCrickInstitute/introduction-to-image-analysis’s past year of commit activity
    Jupyter Notebook 2 CC-BY-SA-4.0 3 0 0 Updated May 1, 2025
  • plateplot Public

    Python library for plotting microtitre plates in altair / vega-lite

    FrancisCrickInstitute/plateplot’s past year of commit activity
    Python 2 0 0 0 Updated Apr 30, 2025
  • recoh-mri-pipeline Public Forked from recoh/pipeline
    FrancisCrickInstitute/recoh-mri-pipeline’s past year of commit activity
    Python 0 MIT 7 0 0 Updated Apr 30, 2025
  • warpAnnotations Public

    A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

    FrancisCrickInstitute/warpAnnotations’s past year of commit activity
    MATLAB 5 0 0 0 Updated Apr 24, 2025
  • zenodo-test Public
    FrancisCrickInstitute/zenodo-test’s past year of commit activity
    0 0 0 0 Updated Apr 24, 2025
  • OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    FrancisCrickInstitute/OmeSliCC’s past year of commit activity
    Python 7 1 0 0 Updated Apr 16, 2025
  • RNU4-2_Saturation_Genome_Editing Public

    Code for analysis of RNU4-2 SGE

    FrancisCrickInstitute/RNU4-2_Saturation_Genome_Editing’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 16, 2025
  • SHRUMS_Methods Public
    FrancisCrickInstitute/SHRUMS_Methods’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Apr 11, 2025
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