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Create notion of 'plug-n-play' level for plugin store #16

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28 changes: 27 additions & 1 deletion new_plugins.json
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@
],
"description": "multiple sequence alignment browser plugin for JBrowse 2",
"location": "https://github.com/GMOD/jbrowse-plugin-msaview",
"plug_n_play": 2,
"url": "https://jbrowse.org/plugins/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.umd.production.min.js",
"license": "Apache License 2.0",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/msaview-screenshot-fs8.png"
Expand All @@ -21,6 +22,7 @@
],
"description": "JBrowse 2 plugin for integrating with GDC resources",
"location": "https://github.com/GMOD/jbrowse-plugin-gdc",
"plug_n_play": 0,
"url": "https://jbrowse.org/plugins/jbrowse-plugin-gdc/dist/jbrowse-plugin-gdc.umd.production.min.js",
"license": "MIT",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/gdc-screenshot-fs8.png"
Expand All @@ -32,6 +34,7 @@
],
"description": "External JB2 plugin implementing a QuantitativeSequence track for displaying base-resolution models.",
"location": "https://github.com/GMOD/jbrowse-plugin-quantseq",
"plug_n_play": 0,
"url": "https://jbrowse.org/plugins/jbrowse-plugin-quantseq/dist/jbrowse-plugin-quantseq.umd.production.min.js",
"license": "Apache License 2.0",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/quantseq-screenshot-fs8.png"
Expand All @@ -42,6 +45,7 @@
"Colin Diesh"
],
"description": "Plugin for displaying GWAS results such as manhattan plot renderings",
"plug_n_play": 1,
"location": "https://github.com/cmdcolin/jbrowse-plugin-gwas",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-gwas/dist/jbrowse-plugin-gwas.umd.production.min.js",
"license": "MIT",
Expand All @@ -53,6 +57,7 @@
"Colin Diesh"
],
"description": "A JBrowse 2 plugin for accessing the UCSC API",
"plug_n_play": 0,
"location": "https://github.com/cmdcolin/jbrowse-plugin-ucsc-api",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-ucsc/dist/jbrowse-plugin-ucsc.umd.production.min.js",
"license": "MIT",
Expand All @@ -64,6 +69,7 @@
"Colin Diesh"
],
"description": "Adapts to APIs like mygene.info to get super rich gene annotations",
"plug_n_play": 2,
"location": "https://github.com/cmdcolin/jbrowse-plugin-biothings-api",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-biothings/dist/jbrowse-plugin-biothings.umd.production.min.js",
"license": "MIT",
Expand All @@ -77,6 +83,7 @@
],
"description": "JBrowse 2 plugin for rendering ideograms",
"location": "https://github.com/cmdcolin/jbrowse-plugin-ideogram",
"plug_n_play": 1,
"url": "https://jbrowse.org/plugins/jbrowse-plugin-ideogram/dist/jbrowse-plugin-ideogram.umd.production.min.js",
"license": "Apache License 2.0",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/ideogram-screenshot-fs8.png"
Expand All @@ -87,6 +94,7 @@
"Colin Diesh"
],
"description": "JBrowse 2 plugin for fetching data from the CIVIC clinical interpretation of cancer variants",
"plug_n_play": 2,
"location": "https://github.com/cmdcolin/jbrowse-plugin-civic-api",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-civic/dist/jbrowseplugincivic.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -98,6 +106,7 @@
"Caroline Bridge"
],
"description": "JBrowse 2 plugin to integrate resources from the ICGC",
"plug_n_play": 2,
"location": "https://github.com/GMOD/jbrowse-plugin-icgc",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-icgc/dist/jbrowse-plugin-icgc.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -109,6 +118,7 @@
"Caroline Bridge"
],
"description": "JBrowse 2 plugin to integrate resources from Reactome",
"plug_n_play": 2,
"location": "https://github.com/GMOD/jbrowse-plugin-reactome",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-reactome/dist/jbrowse-plugin-reactome.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -120,6 +130,7 @@
"Caroline Bridge"
],
"description": "JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels",
"plug_n_play": 2,
"location": "https://github.com/GMOD/jbrowse-plugin-multilevel-linear-view",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-multilevel-linear-view2/dist/jbrowse-plugin-multilevel-linear-view2.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -130,7 +141,8 @@
"authors": [
"Colin Diesh"
],
"description": "JBrowse 2 plugin that adds ability to connect to hubs from the trackhub registry. Note: only for use with v2.3.0 or greater",
"plug_n_play": 2,
"description": "JBrowse 2 plugin that adds ability to connect to hubs from the trackhub registry",
"location": "https://github.com/cmdcolin/jbrowse-plugin-trackhub-registry",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-trackhub-registry/dist/jbrowse-plugin-trackhub-registry.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -141,6 +153,7 @@
"authors": [
"Emilio Righi"
],
"plug_n_play": 0,
"description": "JBrowse 2 plugin that adds ability to retrieve sequences from refget API compliant servers",
"location": "https://github.com/emiliorighi/jbrowse-plugin-refget-api",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-refget-api/dist/jbrowse-plugin-refget-api.umd.production.min.js",
Expand All @@ -152,6 +165,7 @@
"NAL-i5K"
],
"description": "JBrowse 2 plugin that links out to feature page based on dbxref",
"plug_n_play": 0,
"location": "https://github.com/NAL-i5K/jbrowse-plugin-linkout",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-linkout/dist/jbrowse-plugin-linkout.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -162,6 +176,7 @@
"authors": [
"Colin Diesh"
],
"plug_n_play": 1,
"description": "View multiple alignment format (MAF) files as tracks",
"location": "https://github.com/cmdcolin/jbrowse-plugin-mafviewer",
"license": "MIT",
Expand All @@ -178,6 +193,17 @@
"license": "MIT",
"url": "https://jbrowse.org/plugins/jbrowse-plugin-protein3d/dist/jbrowse-plugin-protein3d.umd.production.min.js",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/protein3d-fs8.png"
},
{
"name": "Hubs",
"authors": [
"Colin Diesh"
],
"description": "Automatically load jbrowse hubs as a connection",
"plug_n_play": 0,
"location": "https://github.com/cmdcolin/jbrowse-plugin-hubs",
"license": "MIT",
"url": "https://jbrowse.org/plugins/@cmdcolin/jbrowse-plugin-hubs/dist/jbrowse-plugin-hubs.umd.production.min.js"
}
]
}
2 changes: 1 addition & 1 deletion package.json
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Expand Up @@ -4,7 +4,7 @@
"scripts": {
"download": "node download-plugins.ts",
"generate": "node generate-plugins.ts",
"sync": "aws s3 sync dist s3://jbrowse.org/plugins/ && aws s3 cp new_plugins.json s3://jbrowse.org/plugin-store/plugins.json",
"sync": "aws s3 sync dist s3://jbrowse.org/plugins/ && aws s3 cp new_plugins.json s3://jbrowse.org/plugin-store/plugins2.json",
"deploy": "yarn download && yarn generate && yarn sync",
"postdeploy": "AWS_PAGER=\"\" aws cloudfront create-invalidation --distribution-id E12EBG02P68TDO --paths \"/plugins/*\""
},
Expand Down
26 changes: 25 additions & 1 deletion plugins.json
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@
"authors": ["Colin Diesh"],
"description": "multiple sequence alignment browser plugin for JBrowse 2",
"location": "https://github.com/GMOD/jbrowse-plugin-msaview",
"plug_n_play": 2,
"url": "https://unpkg.com/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.umd.production.min.js",
"license": "Apache License 2.0",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/msaview-screenshot-fs8.png"
Expand All @@ -19,6 +20,7 @@
],
"description": "JBrowse 2 plugin for integrating with GDC resources",
"location": "https://github.com/GMOD/jbrowse-plugin-gdc",
"plug_n_play": 0,
"url": "https://unpkg.com/jbrowse-plugin-gdc/dist/jbrowse-plugin-gdc.umd.production.min.js",
"license": "MIT",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/gdc-screenshot-fs8.png"
Expand All @@ -28,6 +30,7 @@
"authors": ["Elliot Hershberg"],
"description": "External JB2 plugin implementing a QuantitativeSequence track for displaying base-resolution models.",
"location": "https://github.com/GMOD/jbrowse-plugin-quantseq",
"plug_n_play": 0,
"url": "https://unpkg.com/jbrowse-plugin-quantseq/dist/jbrowse-plugin-quantseq.umd.production.min.js",
"license": "Apache License 2.0",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/quantseq-screenshot-fs8.png"
Expand All @@ -36,6 +39,7 @@
"name": "GWAS",
"authors": ["Colin Diesh"],
"description": "Plugin for displaying GWAS results such as manhattan plot renderings",
"plug_n_play": 1,
"location": "https://github.com/cmdcolin/jbrowse-plugin-gwas",
"url": "https://unpkg.com/jbrowse-plugin-gwas/dist/jbrowse-plugin-gwas.umd.production.min.js",
"license": "MIT",
Expand All @@ -45,6 +49,7 @@
"name": "UCSC",
"authors": ["Colin Diesh"],
"description": "A JBrowse 2 plugin for accessing the UCSC API",
"plug_n_play": 0,
"location": "https://github.com/cmdcolin/jbrowse-plugin-ucsc-api",
"url": "https://unpkg.com/jbrowse-plugin-ucsc/dist/jbrowse-plugin-ucsc.umd.production.min.js",
"license": "MIT",
Expand All @@ -54,6 +59,7 @@
"name": "Biothings",
"authors": ["Colin Diesh"],
"description": "Adapts to APIs like mygene.info to get super rich gene annotations",
"plug_n_play": 2,
"location": "https://github.com/cmdcolin/jbrowse-plugin-biothings-api",
"url": "https://unpkg.com/jbrowse-plugin-biothings/dist/jbrowse-plugin-biothings.umd.production.min.js",
"license": "MIT",
Expand All @@ -64,6 +70,7 @@
"authors": ["Colin Diesh", "Caroline Bridge"],
"description": "JBrowse 2 plugin for rendering ideograms",
"location": "https://github.com/cmdcolin/jbrowse-plugin-ideogram",
"plug_n_play": 1,
"url": "https://unpkg.com/jbrowse-plugin-ideogram/dist/jbrowse-plugin-ideogram.umd.production.min.js",
"license": "Apache License 2.0",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/ideogram-screenshot-fs8.png"
Expand All @@ -72,6 +79,7 @@
"name": "CIVIC",
"authors": ["Colin Diesh"],
"description": "JBrowse 2 plugin for fetching data from the CIVIC clinical interpretation of cancer variants",
"plug_n_play": 2,
"location": "https://github.com/cmdcolin/jbrowse-plugin-civic-api",
"url": "https://unpkg.com/jbrowse-plugin-civic/dist/jbrowseplugincivic.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -81,6 +89,7 @@
"name": "ICGC",
"authors": ["Caroline Bridge"],
"description": "JBrowse 2 plugin to integrate resources from the ICGC",
"plug_n_play": 2,
"location": "https://github.com/GMOD/jbrowse-plugin-icgc",
"url": "https://unpkg.com/jbrowse-plugin-icgc/dist/jbrowse-plugin-icgc.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -90,6 +99,7 @@
"name": "Reactome",
"authors": ["Caroline Bridge"],
"description": "JBrowse 2 plugin to integrate resources from Reactome",
"plug_n_play": 2,
"location": "https://github.com/GMOD/jbrowse-plugin-reactome",
"url": "https://unpkg.com/jbrowse-plugin-reactome/dist/jbrowse-plugin-reactome.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -99,6 +109,7 @@
"name": "MultilevelLinearView",
"authors": ["Caroline Bridge"],
"description": "JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels",
"plug_n_play": 2,
"location": "https://github.com/GMOD/jbrowse-plugin-multilevel-linear-view",
"url": "https://unpkg.com/jbrowse-plugin-multilevel-linear-view2/dist/jbrowse-plugin-multilevel-linear-view2.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -107,7 +118,8 @@
{
"name": "TrackHubRegistry",
"authors": ["Colin Diesh"],
"description": "JBrowse 2 plugin that adds ability to connect to hubs from the trackhub registry. Note: only for use with v2.3.0 or greater",
"plug_n_play": 2,
"description": "JBrowse 2 plugin that adds ability to connect to hubs from the trackhub registry",
"location": "https://github.com/cmdcolin/jbrowse-plugin-trackhub-registry",
"url": "https://unpkg.com/jbrowse-plugin-trackhub-registry/dist/jbrowse-plugin-trackhub-registry.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -116,6 +128,7 @@
{
"name": "RefGet",
"authors": ["Emilio Righi"],
"plug_n_play": 0,
"description": "JBrowse 2 plugin that adds ability to retrieve sequences from refget API compliant servers",
"location": "https://github.com/emiliorighi/jbrowse-plugin-refget-api",
"url": "https://unpkg.com/jbrowse-plugin-refget-api/dist/jbrowse-plugin-refget-api.umd.production.min.js",
Expand All @@ -125,6 +138,7 @@
"name": "Linkout",
"authors": ["NAL-i5K"],
"description": "JBrowse 2 plugin that links out to feature page based on dbxref",
"plug_n_play": 0,
"location": "https://github.com/NAL-i5K/jbrowse-plugin-linkout",
"url": "https://unpkg.com/jbrowse-plugin-linkout/dist/jbrowse-plugin-linkout.umd.production.min.js",
"license": "Apache License 2.0",
Expand All @@ -133,6 +147,7 @@
{
"name": "MafViewer",
"authors": ["Colin Diesh"],
"plug_n_play": 1,
"description": "View multiple alignment format (MAF) files as tracks",
"location": "https://github.com/cmdcolin/jbrowse-plugin-mafviewer",
"license": "MIT",
Expand All @@ -147,6 +162,15 @@
"license": "MIT",
"url": "https://unpkg.com/jbrowse-plugin-protein3d/dist/jbrowse-plugin-protein3d.umd.production.min.js",
"image": "https://raw.githubusercontent.com/GMOD/jbrowse-plugin-list/main/img/protein3d-fs8.png"
},
{
"name": "Hubs",
"authors": ["Colin Diesh"],
"description": "Automatically load jbrowse hubs as a connection",
"plug_n_play": 0,
"location": "https://github.com/cmdcolin/jbrowse-plugin-hubs",
"license": "MIT",
"url": "https://unpkg.com/@cmdcolin/jbrowse-plugin-hubs/dist/jbrowse-plugin-hubs.umd.production.min.js"
}
]
}