fix(dashboards): rename lineage field to outbreakLineage and update values - #1360
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Pathoplexus restructured mpox lineages: the LAPIS field is now `outbreakLineage` (old `lineage` field no longer has a lineage index, causing the lineage definition fetch to fail). Lineage values are now prefixed with the outbreak identifier (e.g. `sh2017/F.1`). - Labels updated to "Outbreak & Lineage" throughout - Predefined variants and compare-side-by-side defaults updated to use `sh2017/F.*` values - E2E test helper updated with new field placeholder and lineage value Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Pull request overview
Updates the mpox dashboard configuration to align with Pathoplexus’ new lineage data model by switching the LAPIS lineage field from lineage to outbreakLineage and updating default/predefined lineage values and UI labels accordingly.
Changes:
- Switched mpox lineage LAPIS field to
outbreakLineage. - Updated mpox lineage placeholders/labels to “Outbreak & Lineage”.
- Updated mpox predefined variants and compare-side-by-side defaults to use outbreak-prefixed values (e.g.
sh2017/F.1), plus aligned the E2E helper values.
Reviewed changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated no comments.
| File | Description |
|---|---|
| website/src/views/mpox.ts | Renames the mpox lineage LAPIS field to outbreakLineage and updates placeholders, chart label, and default/predefined lineage values. |
| website/tests/helpers/organisms.ts | Updates mpox E2E helper placeholder and lineage value to match the new “Outbreak & Lineage” filter and outbreak-prefixed lineage format. |
fengelniederhammer
approved these changes
Jul 29, 2026
fhennig
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Jul 29, 2026
…alues (#1360) Pathoplexus restructured mpox lineages: the LAPIS field is now `outbreakLineage` (old `lineage` field no longer has a lineage index, causing the lineage definition fetch to fail). Lineage values are now prefixed with the outbreak identifier (e.g. `sh2017/F.1`). - Labels updated to "Outbreak & Lineage" throughout - Predefined variants and compare-side-by-side defaults updated to use `sh2017/F.*` values - E2E test helper updated with new field placeholder and lineage value Co-authored-by: Felix Hennig <felix-agent@felixhennig.com> Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
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Pathoplexus restructured mpox lineages: the LAPIS field is now
outbreakLineage(oldlineagefield no longer has a lineage index, causing the lineage definition fetch to fail). Lineage values are now prefixed with the outbreak identifier (e.g.sh2017/F.1).sh2017/F.*values