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fix(dashboards): rename lineage field to outbreakLineage and update values #1360

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Merged
fhennig merged 1 commit into from
Jul 29, 2026
Merged

fix(dashboards): rename lineage field to outbreakLineage and update values #1360

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14 changes: 7 additions & 7 deletions website/src/views/mpox.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@ import { ALL_TIMES_LABEL, defaultDateRangeOption } from '../util/defaultDateRang

const earliestDate = '1960-01-01';

const LINEAGE_FIELD_NAME = 'lineage';
const LINEAGE_FIELD_NAME = 'outbreakLineage';
const CLADE_FIELD_NAME = 'clade';

class MpoxConstants implements OrganismConstants {
Expand All @@ -48,7 +48,7 @@ class MpoxConstants implements OrganismConstants {
public readonly lineageFilters: LineageFilterConfig[] = [
{
lapisField: LINEAGE_FIELD_NAME,
placeholderText: 'Lineage',
placeholderText: 'Outbreak & Lineage',
filterType: 'lineage' as const,
},
{
Expand Down Expand Up @@ -88,10 +88,10 @@ class MpoxConstants implements OrganismConstants {
public readonly accessionDownloadFields = PATHOPLEXUS_ACCESSION_DOWNLOAD_FIELDS;
public readonly predefinedVariants = [
{
lineages: { [LINEAGE_FIELD_NAME]: 'F.1' },
lineages: { [LINEAGE_FIELD_NAME]: 'sh2017/F.1' },
},
{
lineages: { [LINEAGE_FIELD_NAME]: 'F.2' },
lineages: { [LINEAGE_FIELD_NAME]: 'sh2017/F.2' },
},
{
lineages: { [CLADE_FIELD_NAME]: 'Ia' },
Expand All @@ -102,7 +102,7 @@ class MpoxConstants implements OrganismConstants {
public get aggregatedVisualizations() {
return getPathoplexusSequencingEffortsAggregatedVisualizations(this, {
sublineages: {
label: 'Sub-Lineages',
label: 'Outbreak & Lineage',
fields: [LINEAGE_FIELD_NAME, CLADE_FIELD_NAME],
},
});
Expand Down Expand Up @@ -142,12 +142,12 @@ export class MpoxCompareSideBySideView extends BaseView<
const defaultPageState = makeCompareSideBySideData(defaultDatasetFilter, [
{
lineages: {
[LINEAGE_FIELD_NAME]: 'F.1',
[LINEAGE_FIELD_NAME]: 'sh2017/F.1',
},
},
{
lineages: {
[LINEAGE_FIELD_NAME]: 'F.2',
[LINEAGE_FIELD_NAME]: 'sh2017/F.2',
},
},
]);
Expand Down
2 changes: 1 addition & 1 deletion website/tests/helpers/organisms.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ export const organismOptions = {
[Organisms.westNile]: { lineage: '1A', lineageFieldPlaceholder: 'Lineage', gene: 'NS1' },
[Organisms.rsvA]: { lineage: 'A.D.5.2', lineageFieldPlaceholder: 'Lineage', gene: 'NS1' },
[Organisms.rsvB]: { lineage: 'B.D.E.1', lineageFieldPlaceholder: 'Lineage', gene: 'NS1' },
[Organisms.mpox]: { lineage: 'F.1', lineageFieldPlaceholder: 'Lineage', gene: 'OPG001' },
[Organisms.mpox]: { lineage: 'sh2017/F.1', lineageFieldPlaceholder: 'Outbreak & Lineage', gene: 'OPG001' },
[Organisms.ebolaSudan]: { mutation: 'G5902T', gene: 'NP' },
[Organisms.ebolaZaire]: { mutation: 'T18365C', gene: 'NP' },
[Organisms.cchf]: { mutation: 'M:G3565A', gene: 'RdRp' },
Expand Down
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