Skip to content

Conversation

@hyper-param
Copy link
Contributor

REQUIRED: Add a summary of your PR here, typically including why the change is needed and what was changed. Include any design alternatives for discussion purposes.


--- YOUR PR SUMMARY GOES HERE ---


REQUIRED: Fill out the below checklists or remove if irrelevant

  1. If you are opening a PR for Community Notebooks under the notebooks/community folder:
  • [x ] This notebook has been added to the CODEOWNERS file under the Community Notebooks section, pointing to the author or the author's team.
  • [ x] Passes all the required formatting and linting checks. You can locally test with these instructions.

@hyper-param hyper-param requested a review from a team as a code owner January 20, 2026 22:06
@gemini-code-assist
Copy link
Contributor

Summary of Changes

Hello @hyper-param, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request addresses a JSON response parsing error within the alphagenome quickstart notebook. The fix involves updating the alphagenome package to its latest version and modifying the HttpDnaClient initialization by removing a parameter that is no longer required or was causing compatibility problems, ensuring correct data processing.

Highlights

  • Dependency Update: The alphagenome wheel package version has been updated from 0.4.2.3 to 0.4.2.5 in the quickstart notebook.
  • API Call Modification: The model_version parameter has been removed from the dna_client_http.create_http_client function call, likely to align with updated API requirements or to resolve parsing issues.
Using Gemini Code Assist

The full guide for Gemini Code Assist can be found on our documentation page, here are some quick tips.

Invoking Gemini

You can request assistance from Gemini at any point by creating a comment using either /gemini <command> or @gemini-code-assist <command>. Below is a summary of the supported commands on the current page.

Feature Command Description
Code Review /gemini review Performs a code review for the current pull request in its current state.
Pull Request Summary /gemini summary Provides a summary of the current pull request in its current state.
Comment @gemini-code-assist Responds in comments when explicitly tagged, both in pull request comments and review comments.
Help /gemini help Displays a list of available commands.

Customization

To customize Gemini Code Assist for GitHub experience, repository maintainers can create a configuration file and/or provide a custom code review style guide (such as PEP-8 for Python) by creating and adding files to a .gemini/ folder in the base of the repository. Detailed instructions can be found here.

Limitations & Feedback

Gemini Code Assist may make mistakes. Please leave feedback on any instances where its feedback is incorrect or counter productive. You can react with 👍 and 👎 on @gemini-code-assist comments. If you're interested in giving your feedback about your experience with Gemini Code Assist for Github and other Google products, sign up here.

You can also get AI-powered code generation, chat, as well as code reviews directly in the IDE at no cost with the Gemini Code Assist IDE Extension.

Footnotes

  1. Review the Privacy Notices, Generative AI Prohibited Use Policy, Terms of Service, and learn how to configure Gemini Code Assist in GitHub here. Gemini can make mistakes, so double check it and use code with caution.

Copy link
Contributor

@gemini-code-assist gemini-code-assist bot left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Code Review

The pull request updates the alphagenome wheel file version and removes the model_version parameter from the create_http_client call. The removal of the model_version parameter is noted as a fix for a JSON parsing error, which is a positive step towards resolving the issue. However, adding a brief inline comment to explain the reason for this removal would significantly improve code clarity and maintainability for future developers.

"source": [
"print(\"Creating HttpDnaClient...\")\n",
"dna_model = dna_client_http.create_http_client(\n",
" vertex_ai_url=vertex_ai_url,\n",
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

medium

The model_version parameter was removed from the create_http_client call. To enhance code clarity and maintainability, please add a brief inline comment explaining the reason for this removal. This context is crucial for understanding the change, especially if it addresses a deprecation, an invalid default value, or a breaking API change.

    # model_version was removed to resolve a JSON parsing error (e.g., due to deprecation or invalid value).
    vertex_ai_url=vertex_ai_url,

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant