13.5.0

Requires Java 21+. Compatible with GEMC/5.11.

Summary

• Fix bug in DC time-to-distance CCDB table usage
• Denoising
  • 40% speedup from batching
  • Use torch.jit.script instead of torch.jit.trace for determinism
• Add --lfs build option for magnetic fields and test data retrieval
  • https://code.jlab.org/hallb/clas12/magfield
  • https://code.jlab.org/hallb/clas12/coatjava/advanced-tests
• Move networks to a separate git repository
  • https://code.jlab.org/hallb/clas12/coatjava/networks
• Add dependabot support for new git submodules
• Use SplitLogger everywhere, to avoid log squelching

What's Changed

• fix: workaround sudden loss of xrootd and clasweb support by @c-dilks in #954
• Fix fully qualified class name for alert constants by @ftouchte in #957
• fix: unify the loggers by @c-dilks in #951
• build(deps): disable clasweb registry for dependabot by @c-dilks in #948
• fix: make git-lfs work in gitlab/archlinux by @baltzell in #959
• build(deps): bump actions/checkout from 5 to 6 by @dependabot[bot] in #960
• build(deps): bump org.apache.maven.plugins:maven-jar-plugin from 3.4.2 to 3.5.0 by @dependabot[bot] in #962
• build(deps): bump org.apache.commons:commons-lang3 from 3.19.0 to 3.20.0 by @dependabot[bot] in #961
• fix: require git-lfs for build option --lfs by @c-dilks in #965
• feat: track git submodule updates with dependabot by @c-dilks in #971
• build(deps): bump org.apache.maven.plugins:maven-resources-plugin from 3.3.1 to 3.4.0 by @dependabot[bot] in #967
• build(deps): bump com.github.spotbugs:spotbugs-maven-plugin from 4.9.8.1 to 4.9.8.2 by @dependabot[bot] in #963
• chore(submodule): bump etc/data/magfield from a0e899e to ba858a8 by @dependabot[bot] in #972
• Fix of Isssue975: Removed doubled lines for bfieldterm laoding in DC tablelo… by @hauenst in #976
• chore(submodule): bump validation/advanced-tests/data from cebf632 to 198e15d by @dependabot[bot] in #973
• Move networks to another repo and cleanup etc by @baltzell in #970
• Make denoising deterministic and speed it up by @tongtongcao in #968
• build: bump version number to 13.5.0 by @baltzell in #977

Full Changelog: 13.4.1...13.5.0

13.4.1

Requires Java 21+. Compatible with GEMC/5.11.

Summary

• ATOF: wedge alignment improvements, use CCDB for effective velocity
• AHDC: fix pulse characterization and AHDC::adc.wfType
• Switch to index-based access for waveform banks
• Add tag1 HIPO schema
• Fix REC::FTrack support for simultaneous conventional and AI DC tracking
• Add GEMC test events for DC2 time-to-distance (both EB and single-event resources)
• Add scaling and profiling scripts
• Cleanup benchmark utility
• Add uber engines for YAML cleanup
• Improve run-clara memory options and default calculation
• Documentation, build system, and GitHub CI improvements
• Update GitLab CI, for syncing from GitHub

What's Changed

• add REC::FTrack to dst schema by @baltzell in #890
• feat: use index-based accessors for waveforms by @baltzell in #883
• switch test to rg-d by @baltzell in #891
• better feedback during slow initialization by @baltzell in #895
• doc: add documentation for each bank by @c-dilks in #892
• doc: setup guide, and cleanup main README.md by @c-dilks in #902
• build(deps): bump com.github.spotbugs:spotbugs from 4.9.6 to 4.9.8 by @dependabot[bot] in #900
• build(deps): bump com.github.spotbugs:spotbugs-maven-plugin from 4.9.6.0 to 4.9.8.1 by @dependabot[bot] in #897
• build(deps): bump actions/upload-artifact from 4 to 5 by @dependabot[bot] in #907
• build(deps): bump actions/download-artifact from 5 to 6 by @dependabot[bot] in #908
• create REC::FTrack in EBTBEngine only by @raffaelladevita in #916
• build(deps): group org.openjfx:javafx for dependabot by @c-dilks in #913
• build(deps): bump ai.djl:bom from 0.34.0 to 0.35.0 by @dependabot[bot] in #910
• doc(deps): GSON version associated with DJL API by @c-dilks in #914
• Add uber services by @baltzell in #896
• Add scaling test and better run-clara memory options by @baltzell in #920
• ci: cache maven cache and separate spotbugs job by @c-dilks in #923
• reducing logger level by @N-Plx in #931
• Fix the wfType description by @ftouchte in #928
• build(deps): constrain org.openjfx:javafx auto-updates by @c-dilks in #925
• build(deps): bump the javafx group with 3 updates by @dependabot[bot] in #932
• feat: applying wedge to wedge phi alignment by @N-Plx in #929
• mc for DC2 reconstruction by @raffaelladevita in #906
• fix gitlab ci, max 2 GB archive by @baltzell in #937
• create a tag1 schema by @baltzell in #938
• feat: reading out ccdb values for atof bar hits effective velocity by @N-Plx in #941
• Add asprof script and CI job by @baltzell in #939
• Add gitlab CI job to sync with github by @baltzell in #943
• Cleanup benchmark/progress utility by @baltzell in #942
• Add script for scaling testing by @baltzell in #945
• Disable some GitLab tests, and make asprof artifacts by @baltzell in #944
• feat(scalers): warn if RUN::scaler has more than 1 row by @c-dilks in #919
• fix: use consistent JDK version for CI and POM by @c-dilks in #918
• build: bump version number to 13.4.1 by @baltzell in #946

Full Changelog: 13.4.0...13.4.1

13.4.0

Requires Java 21

Summary

• Add REC::FTrack bank for FMT tracks
• RG-L/ALERT updates
  • AHDC waveform classification and magnetic field configuration
  • ATOF event start time determination
• Fix ECAL CCDB hit status interpretation
• Add DC denoising
• Miscellaneous
  • Support stock schema from YAML without absolute path
  • Logging, testing, CI improvements
  • Speedup DC TT reversal initialization

What's Changed

• build(deps): bump com.github.spotbugs:spotbugs from 4.9.4 to 4.9.5 by @dependabot[bot] in #833
• build(deps): bump org.apache.maven.plugins:maven-shade-plugin from 3.6.0 to 3.6.1 by @dependabot[bot] in #835
• build(deps): bump wtfjoke/setup-groovy from 2 to 3 by @dependabot[bot] in #838
• build(deps): bump org.codehaus.mojo:flatten-maven-plugin from 1.7.2 to 1.7.3 by @dependabot[bot] in #840
• build(deps): bump org.apache.maven.plugins:maven-compiler-plugin from 3.14.0 to 3.14.1 by @dependabot[bot] in #843
• build(deps): bump org.apache.maven.plugins:maven-javadoc-plugin from 3.11.3 to 3.12.0 by @dependabot[bot] in #841
• build(deps): bump com.github.spotbugs:spotbugs-maven-plugin from 4.9.4.2 to 4.9.6.0 by @dependabot[bot] in #842
• feat: add a flag to be read from yaml to choose if the start time is … by @N-Plx in #848
• build(deps): bump com.github.spotbugs:spotbugs from 4.9.5 to 4.9.6 by @dependabot[bot] in #846
• build(deps): bump org.apache.commons:commons-lang3 from 3.18.0 to 3.19.0 by @dependabot[bot] in #845
• doc: explain how to deal with dependency convergence errors by @c-dilks in #837
• use a new waveform classification by @ftouchte in #849
• Require Java 21 by @baltzell in #813
• Use JRE 25 in CI jobs by @baltzell in #854
• build(deps): bump org.apache.maven.plugins:maven-enforcer-plugin from 3.6.1 to 3.6.2 by @dependabot[bot] in #860
• upated knockout condition in ECAL to cover all used status values by @raffaelladevita in #856
• build(deps): bump org.apache.maven.plugins:maven-dependency-plugin from 3.8.1 to 3.9.0 by @dependabot[bot] in #858
• feat: add new DC denoising by @baltzell in #853
• feat: gitlab updates by @baltzell in #864
• Magnetic field from run configuration in Kalman Filter by @efuchey in #865
• feat: SplitLogger, for sending errors to stderr and everything else to stdout by @c-dilks in #844
• feat: support "stock" schema in YAML files by @baltzell in #874
• feat: install clara from coatjava build script by @baltzell in #876
• feat: use "stock" schema in yamls by @baltzell in #875
• build(deps): bump org.jacoco:jacoco-maven-plugin from 0.8.13 to 0.8.14 by @dependabot[bot] in #881
• fix: increase heap max for rebuild-scalers by @c-dilks in #880
• saving FMT tracks in REC::FTrack by @raffaelladevita in #879
• fix condition to fill REC::FTrack by @raffaelladevita in #884
• faster reversing of DC translation table by @raffaelladevita in #886
• updated schema in unit tests event files by @raffaelladevita in #885
• feat: add CLARA test by @baltzell in #878

Full Changelog: 13.3.0...13.4.0

13.3.0

Requires Java 21.

Summary

• RG-E/K tracking networks
• ALERT calibrations
• RICH geometry
• QADB binning
• Clock rollover
• Decoder
• Logging

What's Changed

• build(deps): bump com.github.spotbugs:spotbugs from 4.9.1 to 4.9.4 by @dependabot[bot] in #790
• build(deps): bump actions/download-artifact from 4 to 5 by @dependabot[bot] in #786
• feat: Add dedicated decoder CI job by @baltzell in #785
• feat: provide default schema directory by @baltzell in #791
• build(deps): bump org.apache.maven.plugins:maven-javadoc-plugin from 3.11.2 to 3.11.3 by @dependabot[bot] in #796
• build(deps): bump actions/download-artifact from 4 to 5 by @dependabot[bot] in #799
• build(deps): bump actions/checkout from 4 to 5 by @dependabot[bot] in #798
• build(deps): bump ai.djl:bom from 0.32.0 to 0.34.0 by @dependabot[bot] in #797
• build(deps): bump actions/setup-java from 4 to 5 by @dependabot[bot] in #803
• build(deps): bump actions/upload-pages-artifact from 3 to 4 by @dependabot[bot] in #804
• Define a default startTime for simulation or ALERT-only reconstruction by @ftouchte in #801
• build(deps): bump org.yaml:snakeyaml from 2.4 to 2.5 by @dependabot[bot] in #806
• Make the reconstruction to work with the modifications in simulation (clas12Tags) by @ftouchte in #805
• fix(ci): don't apt upgrade by @c-dilks in #811
• fix: warning log level is WARNING, not WARN by @c-dilks in #810
• feat: add FINER and FINEST logging properties by @c-dilks in #809
• build(deps): bump com.github.spotbugs:spotbugs-maven-plugin from 4.9.3.2 to 4.9.4.2 by @dependabot[bot] in #817
• Fix DSC2 clock rollover by @baltzell in #814
• refactor: common maven goal wrappers by @c-dilks in #820
• feat: Auto-detect $CLAS12DIR coatjava location by @baltzell in #795
• feat: convenience script to run any class's main by @c-dilks in #808
• feat: added start time reading by @N-Plx in #819
• propagate DSC2 rollover fix to RUN::scaler.fcup and RUN::scaler.fcupg… by @raffaelladevita in #822
• feat: QADB binning support by @c-dilks in #770
• increase ccdb logging level by @baltzell in #829
• Add int-based bank column accessors by @baltzell in #826
• Update RICH support structure STL files by @cpecar in #374
• Decoder cleanup by @baltzell in #792
• Decoder speedups by @baltzell in #784
• Cleanup CLARA decoder by @baltzell in #821
• imported RG-E ai-assisted network, copied RG-K Fall18 network to Fall23/Spring24 run range by @raffaelladevita in #830
• build: bump version number to 13.3.0 by @baltzell in #831

Full Changelog: 13.2.0...13.3.0

13.2.0

What's Changed

• feat: new calib banks by @raffaelladevita in #497
• feat: indexed table class can handle more than 4 indices by @N-Plx in #756
• Try a speed test for IndexedTable by @baltzell in #769
• Add fine time correction in ahdc reconstruction by @ftouchte in #763
• set denoise default to the level that has been actually used by @raffaelladevita in #783
• added decoding of composite bank 0xE103, FADC250's Mode-3 for streaming readout by @raffaelladevita in #776
• feat: Make it easier to run dependency analysis by @baltzell in #778
• fix: reduce the number of CODEOWNERS by @c-dilks in #764
• fix: remove unused etc/ files by @c-dilks in #765
• fix: remove scripts that generated the original CODEOWNERS by @c-dilks in #767
• fix(CODEOWNERS): add .containers/ by @c-dilks in #766
• fix: complete comparator by @baltzell in #781
• Cleanup by @baltzell in #746
• build(deps): bump org.apache.maven.plugins:maven-enforcer-plugin from 3.6.0 to 3.6.1 by @dependabot[bot] in #759
• build(deps): bump org.codehaus.mojo:flatten-maven-plugin from 1.7.1 to 1.7.2 by @dependabot[bot] in #773
• build(deps): bump org.apache.commons:commons-text from 1.13.1 to 1.14.0 by @dependabot[bot] in #771
• build: bump version number to 13.2.0 by @raffaelladevita in #777

Full Changelog: 13.1.0...13.2.0

13.1.0

What's Changed

• fix: specify code owner of all pom.xml files by @c-dilks in #750
• fix: pom.xml code owner must be specified last by @c-dilks in #753
• fix: upload the reconstruction JARs to Maven repo by @c-dilks in #754
• store dEdx in the kftrack bank by @ftouchte in #752
• update to DC tracking to read and use the new TDC cuts ccdb table. by @zieglerv in #747
• build: bump version number to 13.1.0 by @raffaelladevita in #757

Full Changelog: 13.0.3...13.1.0

13.0.3

What's Changed

• Updated the PDGDatabase to include light ions for ALERT by @whit2333 in #704
• Bump org.codehaus.mojo:flatten-maven-plugin from 1.7.0 to 1.7.1 by @dependabot[bot] in #702
• build: deploy reconstruction JARs and unify aggregator and parent POMs by @c-dilks in #688
• Bump org.apache.maven.plugins:maven-dependency-plugin from 3.6.1 to 3.8.1 by @dependabot[bot] in #683
• Revert "Bump org.apache.maven.plugins:maven-dependency-plugin from 3.6.1 to 3.8.1" by @baltzell in #710
• Minimal github->gitlab CI conversion by @baltzell in #711
• build(deps): bump com.github.spotbugs:spotbugs-maven-plugin from 4.9.3.0 to 4.9.3.2 by @dependabot[bot] in #712
• feat: CODEOWNERS file by @c-dilks in #244
• build(deps): bump org.apache.maven.plugins:maven-enforcer-plugin from 3.5.0 to 3.6.0 by @dependabot[bot] in #726
• fix: CODEOWNERS file recursion by @c-dilks in #735
• Apply raw hit cuts after calibration correction by @ftouchte in #734
• feat: refactoring waveform processor, defining waveform types by @N-Plx in #732
• build(deps): bump org.apache.commons:commons-lang3 from 3.17.0 to 3.18.0 by @dependabot[bot] in #737
• fix(groovy): allow for user's custom classpath ($JYPATH) by @c-dilks in #742
• fix: change hardcoded values by @N-Plx in #745
• build: bump version number to 13.0.3 by @baltzell in #748

Full Changelog: 13.0.2...13.0.3

13.0.2

What's Changed

• cleanup docs by @baltzell in #680
• Use non-default name by @baltzell in #691
• Single-threaded CI builds, until clasweb fixed by @baltzell in #693
• add -v option by @baltzell in #681
• feat: optionally download fieldmaps from xrootd or cvmfs by @c-dilks in #689
• Fix (this time really) the ZooModelNotFound by adding the dependency to coatjava/lib/services by @mathieuouillon in #694
• fix: remove etc/bankdefs/hipo4/README.md by @c-dilks in #697
• Change logger level from FINE to FINEST for DC codes at the event level by @tongtongcao in #699
• build: bump version number to 13.0.2 by @baltzell in #700

Full Changelog: 13.0.1...13.0.2

13.0.1

What's Changed

• fix: deploy standalone POM for shaded JAR by @c-dilks in #666
• New AI model for AHDC after the geometry change. by @mathieuouillon in #667
• bump org.json:json from 20160810 to 20250517 by @dependabot in #661
• fix: make install-clara independent from libexec by @c-dilks in #669
• bump org.yaml:snakeyaml from 1.18 to 2.4 by @dependabot in #660
• bump ai.djl:api from 0.30.0 to 0.33.0 by @dependabot in #659
• bump org.slf4j:slf4j-api from 1.7.6 to 2.0.17 by @dependabot in #658
• Somethings change with pom.xml that make DJL library not loaded. by @mathieuouillon in #672
  • restore DJL runtime libraries
  • use AI tracking finding in AHDC test
• silence after a few errors by @baltzell in #675
• build: bump version number to 13.0.1 by @baltzell in #679

Full Changelog: 13.0.0...13.0.1

COATJAVA 13.0.0

This release is the first with final DCRB firmware v2 integration and its DC::tot bank, hence the major version bump. No more "t" releases.

Summary

• DCRB firmware v2 support and the DC::tot bank
• Maven build system overhaul
• New multi-vertex engine with YAML reaction syntax
• DCHB pseudo-segment fixes
• Pass-through JVM options for bin wrapper scripts
• Improved use of logging service
• More SQLite usage in CI jobs and CCDB optimizations
• CLARA I/O service additions
• Decoding now defaults to field scales from RCDB
• Remove BOS support, unused EVIO schema, unused classes

Full Changelog: 12.0.6t...13.0.0

What's Changed

• build(deps): bump org.apache.maven.plugins:maven-resources-plugin from 3.2.0 to 3.3.1 by @dependabot in #630
• build: remove repo mirrors in favor of POM <repository> by @c-dilks in #642
• build: optionally suppress download progress by @c-dilks in #643
• update default grapes version by @baltzell in #641
• Include vtx by @zieglerv in #644
• build!: cleanup dependency tree, shaded JAR, and deploy properly by @c-dilks in #632
• ci: small fixes after #632 by @c-dilks in #656
• fix issues for pseudo-segments in HB tracking by @tongtongcao in #649
• build(deps): bump com.google.code.gson:gson from 2.11.0 to 2.13.1 by @dependabot in #655
• bump grapes version by @baltzell in #657
• Switch to new DC::tot bank by @baltzell in #645
• CLARA I/O service development by @baltzell in #638
• build: bump version number to 13.0.0 by @baltzell in #663

Full Changelog: 12.0.6t...13.0.0