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@MulticellularSystemsLab

MulticellularSystemsLab

Project code for the Multicellular Systems Lab at the University of Notre Dame

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  1. MAPPER MAPPER Public

    Forked from fjhuizar/MAPPER

    Here is a repository for the manuscript titled MAPPER: An open-source, high dimensional image analysis pipeline unmasks differential regulation of Drosophila wing features developed and written by …

    HTML 2

  2. ReverseEngineeringMorphogenesis ReverseEngineeringMorphogenesis Public

    Jupyter Notebook 1 1

  3. MSELab_Calcium_Cartography_2021 MSELab_Calcium_Cartography_2021 Public

    Forked from fjhuizar/MSELab_Calcium_Cartography_2021

    This is a code repository for the manuscript titled: From spikes to intercellular waves: tuning intercellular Ca2+ signaling dynamics modulates organ size control.

    Jupyter Notebook 1

  4. intercellular_calcium_wave_toolkit intercellular_calcium_wave_toolkit Public

    Forked from pavelbrodskiy/intercellular_calcium_wave_toolkit

    Toolkit for spatial analysis of calcium wave dynamics

    MATLAB

  5. EpiscaleAnalysis EpiscaleAnalysis Public

    Forked from MSELab/EpiscaleAnalysis

    Analysis for Epi-Scale model

    MATLAB

  6. HighContentAnalysis HighContentAnalysis Public

    Forked from pavelbrodskiy/HighContentAnalysis

    HighContentAnalysis: Analysis code for multi-temporal-scale experimentation. Eg 24 hour long-term ecad imaging combined with several high-frequency calcium videos of specific wells.

    MATLAB

Repositories

Showing 10 of 12 repositories
  • Piezo-manuscript-resouces Public

    Contains the codes used for simulations and data analysis within "Kumar N, Mim MS, Levis M, Unger M, Miranda G, Robinett T, Zartman JJ. Piezo regulates epithelial topology and promotes precision in organ size control. bioRxiv. 2023:2023-08."

    MulticellularSystemsLab/Piezo-manuscript-resouces’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 6, 2024
  • ReverseEngineeringMorphogenesis Public
    MulticellularSystemsLab/ReverseEngineeringMorphogenesis’s past year of commit activity
    Jupyter Notebook 1 1 7 0 Updated Aug 17, 2023
  • MAPPER Public Forked from fjhuizar/MAPPER

    Here is a repository for the manuscript titled MAPPER: An open-source, high dimensional image analysis pipeline unmasks differential regulation of Drosophila wing features developed and written by Nilay Kumar and Francisco Huizar in the Zartman lab at the University of Notre Dame.

    MulticellularSystemsLab/MAPPER’s past year of commit activity
    HTML 2 LGPL-2.1 1 0 0 Updated Apr 12, 2022
  • MSELab_Calcium_Cartography_2021 Public Forked from fjhuizar/MSELab_Calcium_Cartography_2021

    This is a code repository for the manuscript titled: From spikes to intercellular waves: tuning intercellular Ca2+ signaling dynamics modulates organ size control.

    MulticellularSystemsLab/MSELab_Calcium_Cartography_2021’s past year of commit activity
    Jupyter Notebook 1 LGPL-2.1 2 0 0 Updated Feb 27, 2022
  • intercellular_calcium_wave_toolkit Public Forked from pavelbrodskiy/intercellular_calcium_wave_toolkit

    Toolkit for spatial analysis of calcium wave dynamics

    MulticellularSystemsLab/intercellular_calcium_wave_toolkit’s past year of commit activity
    MATLAB 0 3 0 0 Updated Nov 19, 2018
  • EpiscaleAnalysis Public Forked from MSELab/EpiscaleAnalysis

    Analysis for Epi-Scale model

    MulticellularSystemsLab/EpiscaleAnalysis’s past year of commit activity
    MATLAB 0 2 0 0 Updated Oct 18, 2018
  • embryoSimulation Public Forked from pavelbrodskiy/embryoSimulation
    MulticellularSystemsLab/embryoSimulation’s past year of commit activity
    MATLAB 0 2 0 0 Updated Oct 18, 2018
  • HighContentAnalysis Public Forked from pavelbrodskiy/HighContentAnalysis

    HighContentAnalysis: Analysis code for multi-temporal-scale experimentation. Eg 24 hour long-term ecad imaging combined with several high-frequency calcium videos of specific wells.

    MulticellularSystemsLab/HighContentAnalysis’s past year of commit activity
    MATLAB 0 1 0 0 Updated May 9, 2017
  • calciumWaveModeling Public Forked from pavelbrodskiy/calciumWaveModeling

    MATLAB implementation of calcium signaling in the Drosophila wing disc

    MulticellularSystemsLab/calciumWaveModeling’s past year of commit activity
    Mathematica 0 1 0 0 Updated Sep 26, 2016
  • calciumWaveAnalysis Public Forked from pavelbrodskiy/calciumWaveAnalysis

    calciumWaveAnalysis: statistical analysis for either experimental or simulation calcium oscillation

    MulticellularSystemsLab/calciumWaveAnalysis’s past year of commit activity
    MATLAB 0 1 0 0 Updated Sep 15, 2016
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