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    12 repositories

    • Piezo-manuscript-resouces

      Public
      Contains the codes used for simulations and data analysis within "Kumar N, Mim MS, Levis M, Unger M, Miranda G, Robinett T, Zartman JJ. Piezo regulates epithelial topology and promotes precision in organ size control. bioRxiv. 2023:2023-08."
      Jupyter Notebook
      •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

    • ReverseEngineeringMorphogenesis

      Public
      Jupyter Notebook
      •1•1•7•0•Updated Aug 17, 2023Aug 17, 2023

    • MAPPER

      Public
      Here is a repository for the manuscript titled MAPPER: An open-source, high dimensional image analysis pipeline unmasks differential regulation of Drosophila wing features developed and written by Nilay Kumar and Francisco Huizar in the Zartman lab at the University of Notre Dame.
      HTML
      •
      GNU Lesser General Public License v2.1
      •1•2•0•0•Updated Apr 12, 2022Apr 12, 2022

    • MSELab_Calcium_Cartography_2021

      Public
      This is a code repository for the manuscript titled: From spikes to intercellular waves: tuning intercellular Ca2+ signaling dynamics modulates organ size control.
      Jupyter Notebook
      •
      GNU Lesser General Public License v2.1
      •2•1•0•0•Updated Feb 27, 2022Feb 27, 2022

    • intercellular_calcium_wave_toolkit

      Public
      Toolkit for spatial analysis of calcium wave dynamics
      MATLAB
      •3•0•0•0•Updated Nov 19, 2018Nov 19, 2018

    • EpiscaleAnalysis

      Public
      Analysis for Epi-Scale model
      MATLAB
      •2•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • embryoSimulation

      Public
      MATLAB
      •2•0•0•0•Updated Oct 18, 2018Oct 18, 2018

    • HighContentAnalysis

      Public
      HighContentAnalysis: Analysis code for multi-temporal-scale experimentation. Eg 24 hour long-term ecad imaging combined with several high-frequency calcium videos of specific wells.
      MATLAB
      •1•0•0•0•Updated May 9, 2017May 9, 2017

    • calciumWaveModeling

      Public
      MATLAB implementation of calcium signaling in the Drosophila wing disc
      Mathematica
      •1•0•0•0•Updated Sep 26, 2016Sep 26, 2016

    • calciumWaveAnalysis

      Public
      calciumWaveAnalysis: statistical analysis for either experimental or simulation calcium oscillation
      MATLAB
      •1•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • stitchingAndVignettingCorrection

      Public
      Code which takes raw data and stitches it with vignetting correction.
      MATLAB
      •1•0•0•0•Updated Jan 19, 2016Jan 19, 2016

    • embryoStatistics

      Public
      EmbryoStatistics: network analysis of embryo segmentation topology
      MATLAB
      •1•0•0•0•Updated Nov 23, 2015Nov 23, 2015