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Releases: PhysiCell-Tools/PhysiCell-Studio

v2.46.5 - update rules table if a custom var name changed

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@rheiland rheiland released this 01 Jul 21:01
1016ba8
  • if a user edits the name of a custom var and it was used in the rules table, automatically update the table (thanks @elmbeech)
  • but if a user deletes a custom var, we do not try to delete it automatically from the rules. If they attempt to run a sim, it will throw a sufficiently verbose warning and stop.

v2.46.4 - gradient-angle plots; improve Galaxy UI; misc

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@rheiland rheiland released this 22 Jun 23:07
64ab390
  • improve Galaxy features
  • feature: add gradient-angle mode UX with popup color wheel controls
  • fix: skip empty lines when reading rules from CSV
  • add some utility scripts
  • allow loading sample projects
  • fix: update label size handling to use dynamic nlabels (in pyMCDS*)
  • enable/disable Motility widgets

Thanks @drbergman and @elmbeech !

v2.46.3 - biwt hotfix

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@rheiland rheiland released this 13 May 22:54
19597b7
Merge pull request #354 from PhysiCell-Tools/development

hotfix for biwt

v2.46.2 - bug fix on print for sbml

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@rheiland rheiland released this 12 May 00:20
4c83de9

v2.46.1 - sync code bases; ICs spacing; fix cell scalars colorbar

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@rheiland rheiland released this 11 May 20:15
ee2e546
  • start sync of Studio code base: desktop vs cloud (Galaxy, nanoHUB)
  • get Rules with toggles on Galaxy
  • currently disallow intracellular (subtab) on cloud version
  • add "spacing" feature for more ICs cells geometries (requested by @MathCancer )
  • fix cell scalar colorbar: toggling back to .mat from .svg now retains colorbar info
  • fix default apoptosis_01_trate (thanks @elmbeech)

v2.46.0 - dFBA intracellular tab and more

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@rheiland rheiland released this 20 Apr 15:51
e0a2368

Big thanks to @marcorusc , @vincent-noel , @drbergman !

  • new dFBA intracellular option
  • fix delete /output bug on Windows
  • do not expose mech voxel size (until ready in PhysiCell)
  • allow 3D contours
  • cleanup/refactor BIWT
  • ICs tab updates on load user proj
  • cleanup debug prints

v2.45.2 - match ICs to domain; robust substrate ICs; modify Plot output Select

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@rheiland rheiland released this 18 Jan 15:49
7039883
  • fix bug in ICs substrates
  • fix ICs substrate colorbar issue and better interp!
  • more robust ICs substrates
  • modify/clarify Plot folder Select functionality

v2.45.1 - just bump VERSION

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@rheiland rheiland released this 12 Dec 12:58
9451ae7
Merge pull request #338 from PhysiCell-Tools/development

bump VERSION

v2.45.0 - physiboss fixes/updates; misc

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@rheiland rheiland released this 12 Nov 20:13
87dacd2
  • PhysiBoSS improvements

    • Emptying lineedit when boolean intracellular is not selected
    • fix indentation in fill_intracellular_xml
    • Forcing QLocale to en-US
    • MaBoSS nodes and parameters are now sorted alphabetically
    • Sorting maboss nodes in plots
    • fix duplicated index in celltypes (still unsure why it happens)
    • Fix sbml intracellular for multiple cell types
  • Fix UnicodeDecodeError when PhysiCell outputs Chinese characters on Windows

  • default toggle on (empty) cells.csv ICs on Config Basics

v2.44.2 - misc improvements; fix for rules parsing

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@rheiland rheiland released this 04 Nov 01:26
9b4b955
  • remove confusing horiz line in ICs tab
  • append color white to end of color list
  • hacks to rules parsing (mostly for immune-function-sample)