v2.37.3 - improved rules; allow symlink on startup

• improvements to creating rules
• allow Paul's way of using a symlink to studio.py
• gitignore .log

v2.37.2 - proper check for duplicate rules

• Plot rules with same signal and different directions
• Update multivariate_rules.py
• add axes fixed test
• Update on check_for_duplicate function
• Now the check for duplicate rules include the direction.

v2.37.1 - update license info

• describe licenses in README
• GPL v3 for PyQt5 modules
• BSD 3-clause for files unrelated to PyQt5

v2.37.0 - friendly controls for Max time; multivariate rules controls

• Rules tab now has a Plot rules button which allows for dynamic control of multivariate rules (thanks Heber Rocha!)
• Config Basics tab has user-friendly controls of Max Time (days, hours, mins, fractional mins) (thanks Daniel Bergman!)
• .gitignore updated for git submodule edge case

v2.36.0 - smarter rules handling

Smarter rules handling:

• when selecting an existing rule in the table, then Plot rule, be sure to use the current base value for the Behavior. Also, check to see if the current base value and Saturation value are consistent with the Direction (increases vs. decreases). If there is an inconsistency, warn the user that you will change "increases" to "decreases" (or vice-versa).
• check for existing cell type and signal for a selected behavior and don't allow adding another (which PhysiCell would warn about and ignore)
• do not update the widget values for Base value or Saturation value when an existing rule is plotted.
• avoid an annoying floating point epsilon value when the Saturation value is computed for a newly selected Behavior (in the dropdown)

Fix the config/pred_prey_farmer.xml model to more closely match the original, hierarchical config file in PhysiCell.

v2.35.2 - append .exe if Windows exec; more dependencies

• added more dependencies to requirements.txt and environment.yml
• for sample projects, append .exe to executables if on Windows

v2.35.1 - match green colors; start phenotype summary

• have green color match .svg and .mat
• begin functionality for phenotype summary windows

v2.35.0 - bug fixes, feature updates

• bug fix error msg
• quick fix just hard-coding all bioinf flags as false
• cleanup old data files
• Save snap.csv in View options
• Pip dependencies now explicit in environment.yml, not depending on requirements.txt

v2.34.3 - cleanup /data and add tumor_demo model there

Used in the Studio publication:

• https://github.com/PhysiCell-Tools/PhysiCell-Studio/blob/main/data/tumor_demo.txt
• https://github.com/PhysiCell-Tools/PhysiCell-Studio/blob/main/data/tumor_demo.zip

v2.34.2 - add more deps to env

Merge pull request #182 from PhysiCell-Tools/development

Development