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add the "funded by" logos in the home page

Status: Open.

#1112 In Proteobench/ProteoBench;

· mlocardpaulet opened on Jul 27, 2026

Intermediate format vs result file

Status: Open.

#1109 In Proteobench/ProteoBench;

· RobbinBouwmeester opened on Jul 17, 2026

Ask for and parse --cfg file for DIA-NN

Status: Open.

#1105 In Proteobench/ProteoBench;

· rodvrees opened on Jul 10, 2026

Support Radiant for DIA quant modules

later

Status: Open.

#1091 In Proteobench/ProteoBench;

· rodvrees opened on Jul 2, 2026

Module settings

Status: Open.

#1078 In Proteobench/ProteoBench;

· RobbinBouwmeester opened on Jun 25, 2026

Automate ALPHA banner for ALPHA modules

Status: Open.

#1074 In Proteobench/ProteoBench;

· rodvrees opened on Jun 24, 2026

Parameter parsing modification fields into .toml

later

Status: Open.

#1067 In Proteobench/ProteoBench;

· RobbinBouwmeester opened on Jun 15, 2026

Cleanup/improve jupyter notebook repo

Status: Open.

#1049 In Proteobench/ProteoBench;

· RobbinBouwmeester opened on Jun 2, 2026

add information regarding pmultiqc in documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#1045 In Proteobench/ProteoBench;

· mlocardpaulet opened on May 28, 2026

intermediate format specification

Status: Open.

#1042 In Proteobench/ProteoBench;

· mlocardpaulet opened on May 27, 2026

Switch to Custom Naviagation

Status: Open.

#1025 In Proteobench/ProteoBench;

· enryH opened on Apr 17, 2026

Support for FlashLFQ

Status: Open.

#1024 In Proteobench/ProteoBench;

· rodvrees opened on Apr 17, 2026