Skip to content
View QiuyuYu3's full-sized avatar
😴
too busy sleeping.
😴
too busy sleeping.

Block or report QiuyuYu3

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
QiuyuYu3/README.md

Qiuyu Yu

I am an incoming HDFS PhD student at Auburn University.

My research interests include computational neuroimaging, statistics, and methodology, with a secondary interest in astrophysics. I previously worked as a student therapist and bring three years of clinical experience to my dynamic research background.

FMRI Projects

Here is the handbook I developed while teaching myself fMRI:

Open-source tools I created for fMRI data analysis:

  • Neuroimaging Pipeline - a modular neuroimaging preprocessing meta pipeline for HPC clusters, with both a GUI and CLI.
  • fMRI-QCtoolkit - a modular Python package for fMRI QC, integrating quantitative metrics from MRIQC, fMRIPrep, and AFNI, along with manual scoring.

Clinical & Community Resources

Pinned Loading

  1. fMRI-Data-Processing-Manual-on-HPC fMRI-Data-Processing-Manual-on-HPC Public

    https://qiuyuyu3.github.io/fMRI-Data-Processing-Manual-on-HPC/

    3

  2. GeorgiaCenterforDevelopmentalScience/Neuro-Pipeline GeorgiaCenterforDevelopmentalScience/Neuro-Pipeline Public

    A modular neuroimaging preprocessing pipeline for HPC clusters, with both a GUI and CLI.

    Python 4

  3. fMRI-QCtoolkit fMRI-QCtoolkit Public

    Python package for quality control of fMRI data.

    Python 3

  4. FMRI-Workshop FMRI-Workshop Public

    A hands-on, application-focused workshop that takes complete beginners from raw MRI data to a reproducible fMRI analysis on an HPC cluster.

    1

  5. AILR-AI-assisted-literature-review-pipeline AILR-AI-assisted-literature-review-pipeline Public

    A desktop app for running systematic / scoping literature reviews with an AI as a second reviewer.

    Python 2

  6. Deal_with_the_fear_and_anxiety_of_using_English_to_do_clinical_work Deal_with_the_fear_and_anxiety_of_using_English_to_do_clinical_work Public

    How to Deal with the Fear and Anxiety when Using English to do Clinical Work as a Non-native Speaker or an International Student

    1