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In Pull Request #27, we changed the config file to include a directed label under each reconstruction algorithm. This is either true or false, and is used to determine whether to write summary statistics and graphspace JSON files for a directed graph or an undirected graph. This may not be the ideal way to handle algorithm-level attributes. A couple thoughts:
- We may want to have a way to designate the input network files as
directedorundirectedas well. For example, theshortest-pathsreconstruction algorithm could probably take either a directed or undirected graph. The algorithm'sprepare-inputswould handle that according to the dataset. - There are cases where the output should be considered
directed(e.g, visualizing a graph) and it should be consideredundirected(e.g., we often compute precision-recall in an undirected manner, so if an algorithm returns(u,v)or(v,u)the two edges are counted the same way). This motivates somedirectedtag later underanalysis -> precrecwhen we get that implemented. - There may be other algorithm-level attributes that we would want to consider. Output may be
rankedorunranked(e.g., analysis should consider the set of edges, even for pathlinker, as a single subnetwork rather than a ranked list of edges). I do not know whether they should be algorithm-level or analysis-level labels, or some combination of both.
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documentationImprovements or additions to documentationImprovements or additions to documentation