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Flaky PCA test

bugSomething isn't workingSomething isn't working

infrastructuremisc. changes made to SPRAS itselfmisc. changes made to SPRAS itself

Status: Open.

#452 In Reed-CompBio/spras;

· tristan-f-r opened on Dec 8, 2025

Potential new summary statistics

discussionFurther information is requestedFurther information is requested

Status: Open.

#440 In Reed-CompBio/spras;

· ntalluri opened on Nov 13, 2025

NetworkAnalyst, another tool for pathway reconstruction

discussionFurther information is requestedFurther information is requested

Status: Open.

#439 In Reed-CompBio/spras;

· ntalluri opened on Nov 13, 2025

Fix Cytoscape profiling logging

bugSomething isn't workingSomething isn't working

Status: Open.

#438 In Reed-CompBio/spras;

· agitter opened on Nov 7, 2025

SPRAS in Spack?

discussionFurther information is requestedFurther information is requested

enhancementNew feature or requestNew feature or request

Status: Open.

#430 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 25, 2025

PAPER

algorithmPathway reconstruction algorithm to add to SPRASPathway reconstruction algorithm to add to SPRAS

Status: Open.

#428 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 21, 2025

FDRnet

algorithmPathway reconstruction algorithm to add to SPRASPathway reconstruction algorithm to add to SPRAS

Status: Open.

#425 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 20, 2025

Evaluation and Aggregation of Active Module Identification Algorithms

discussionFurther information is requestedFurther information is requested

Status: Open.

#424 In Reed-CompBio/spras;

· agitter opened on Oct 19, 2025

SPRAS tutorial 2025-10-13 notes

discussionFurther information is requestedFurther information is requested

Status: Open.

#413 In Reed-CompBio/spras;

· agitter opened on Oct 13, 2025

SPRAS CLI

enhancementNew feature or requestNew feature or request

Status: Open.

#410 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 10, 2025

Generate cytoscape session files manually

enhancementNew feature or requestNew feature or request

performanceissues related to runtimeissues related to runtime

Status: Open.

#409 In Reed-CompBio/spras;

· tristan-f-r opened on Oct 9, 2025

Make Docker/Apptainer image cache configurable

Status: Open.

#404 In Reed-CompBio/spras;

· jhiemstrawisc opened on Oct 2, 2025