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Pull requests: Reed-CompBio/spras
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refactor(dataset): drop unused edge_table parameter
easy
PRs which take at most a minute to review with little thinking.
infrastructure
misc. changes made to SPRAS itself
#263
opened Jun 10, 2025 by
tristan-f-r
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RWR
algorithm
Pathway reconstruction algorithm to add to SPRAS
#261
opened Jun 10, 2025 by
tristan-f-r
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fix: check if edge weights are between 0 and 1
easy
PRs which take at most a minute to review with little thinking.
infrastructure
misc. changes made to SPRAS itself
#255
opened Jun 3, 2025 by
tristan-f-r
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refactor: remove support for indicator files
infrastructure
misc. changes made to SPRAS itself
#254
opened Jun 3, 2025 by
tristan-f-r
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perf: pickle summarize networks call
analysis
Analysis of PRA outputs
#253
opened Jun 3, 2025 by
tristan-f-r
•
Draft
feat: EdgeLinker
algorithm
Pathway reconstruction algorithm to add to SPRAS
#252
opened Jun 3, 2025 by
tristan-f-r
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feat: BTB
algorithm
Pathway reconstruction algorithm to add to SPRAS
#250
opened Jun 3, 2025 by
tristan-f-r
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Finish algorithm similarity eval
analysis
Analysis of PRA outputs
#248
opened Jun 2, 2025 by
ntalluri
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feat: DIAMOnD
algorithm
Pathway reconstruction algorithm to add to SPRAS
question
Further information is requested
#247
opened May 30, 2025 by
tristan-f-r
•
Draft
chore: restrict MEO to alpine
algorithm
Pathway reconstruction algorithm to add to SPRAS
#242
opened May 29, 2025 by
tristan-f-r
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feat: ResponseNet
algorithm
Pathway reconstruction algorithm to add to SPRAS
#241
opened May 29, 2025 by
tristan-f-r
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feat: ROBUST
algorithm
Pathway reconstruction algorithm to add to SPRAS
#240
opened May 28, 2025 by
tristan-f-r
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style: yamlfmt
infrastructure
misc. changes made to SPRAS itself
#239
opened May 28, 2025 by
tristan-f-r
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fix: let raw_pathway_df handle present headers but no data
infrastructure
misc. changes made to SPRAS itself
#236
opened May 28, 2025 by
tristan-f-r
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fix: custom installation of DOMINO
algorithm
Pathway reconstruction algorithm to add to SPRAS
#235
opened May 27, 2025 by
tristan-f-r
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refactor(contributing): clean up local_neighborhood
documentation
Improvements or additions to documentation
#229
opened May 27, 2025 by
tristan-f-r
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fix: tighten & relax yaml parsing constraints
infrastructure
misc. changes made to SPRAS itself
#228
opened May 26, 2025 by
tristan-f-r
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feat: experimental podman support
infrastructure
misc. changes made to SPRAS itself
#227
opened May 26, 2025 by
tristan-f-r
•
Draft
fix: make omicsintegrator2 work offline
algorithm
Pathway reconstruction algorithm to add to SPRAS
#226
opened May 26, 2025 by
tristan-f-r
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feat: netmix2
algorithm
Pathway reconstruction algorithm to add to SPRAS
#225
opened May 23, 2025 by
tristan-f-r
•
Draft
feat: direction support on apsp
algorithm
Pathway reconstruction algorithm to add to SPRAS
#223
opened May 22, 2025 by
tristan-f-r
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feat: local neighborhood
algorithm
Pathway reconstruction algorithm to add to SPRAS
#221
opened May 22, 2025 by
tristan-f-r
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fix: friendly logging
infrastructure
misc. changes made to SPRAS itself
#220
opened May 22, 2025 by
tristan-f-r
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Algorithm similarity eval - general implementation
analysis
Analysis of PRA outputs
#214
opened Apr 14, 2025 by
sumedhars
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