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Pull requests: Reed-CompBio/spras

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Pull requests list

refactor(dataset): drop unused edge_table parameter easy PRs which take at most a minute to review with little thinking. infrastructure misc. changes made to SPRAS itself
#263 opened Jun 10, 2025 by tristan-f-r Loading…
RWR algorithm Pathway reconstruction algorithm to add to SPRAS
#261 opened Jun 10, 2025 by tristan-f-r Loading…
Profiling
#260 opened Jun 9, 2025 by jhiemstrawisc Loading…
5
fix: check if edge weights are between 0 and 1 easy PRs which take at most a minute to review with little thinking. infrastructure misc. changes made to SPRAS itself
#255 opened Jun 3, 2025 by tristan-f-r Loading…
1
2
refactor: remove support for indicator files infrastructure misc. changes made to SPRAS itself
#254 opened Jun 3, 2025 by tristan-f-r Loading…
1
perf: pickle summarize networks call analysis Analysis of PRA outputs
#253 opened Jun 3, 2025 by tristan-f-r • Draft
feat: EdgeLinker algorithm Pathway reconstruction algorithm to add to SPRAS
#252 opened Jun 3, 2025 by tristan-f-r Loading…
1
feat: BTB algorithm Pathway reconstruction algorithm to add to SPRAS
#250 opened Jun 3, 2025 by tristan-f-r Loading…
6
Finish algorithm similarity eval analysis Analysis of PRA outputs
#248 opened Jun 2, 2025 by ntalluri Loading…
15
feat: DIAMOnD algorithm Pathway reconstruction algorithm to add to SPRAS question Further information is requested
#247 opened May 30, 2025 by tristan-f-r • Draft
1
3
chore: restrict MEO to alpine algorithm Pathway reconstruction algorithm to add to SPRAS
#242 opened May 29, 2025 by tristan-f-r Loading…
3
feat: ResponseNet algorithm Pathway reconstruction algorithm to add to SPRAS
#241 opened May 29, 2025 by tristan-f-r Loading…
7
feat: ROBUST algorithm Pathway reconstruction algorithm to add to SPRAS
#240 opened May 28, 2025 by tristan-f-r Loading…
1
1
style: yamlfmt infrastructure misc. changes made to SPRAS itself
#239 opened May 28, 2025 by tristan-f-r Loading…
1
5
fix: let raw_pathway_df handle present headers but no data infrastructure misc. changes made to SPRAS itself
#236 opened May 28, 2025 by tristan-f-r Loading…
1
34
fix: custom installation of DOMINO algorithm Pathway reconstruction algorithm to add to SPRAS
#235 opened May 27, 2025 by tristan-f-r Loading…
1
9
refactor(contributing): clean up local_neighborhood documentation Improvements or additions to documentation
#229 opened May 27, 2025 by tristan-f-r Loading…
fix: tighten & relax yaml parsing constraints infrastructure misc. changes made to SPRAS itself
#228 opened May 26, 2025 by tristan-f-r Loading…
17
feat: experimental podman support infrastructure misc. changes made to SPRAS itself
#227 opened May 26, 2025 by tristan-f-r • Draft
1
6
fix: make omicsintegrator2 work offline algorithm Pathway reconstruction algorithm to add to SPRAS
#226 opened May 26, 2025 by tristan-f-r Loading…
1
4
feat: netmix2 algorithm Pathway reconstruction algorithm to add to SPRAS
#225 opened May 23, 2025 by tristan-f-r • Draft
1
16
feat: direction support on apsp algorithm Pathway reconstruction algorithm to add to SPRAS
#223 opened May 22, 2025 by tristan-f-r Loading…
1
23
feat: local neighborhood algorithm Pathway reconstruction algorithm to add to SPRAS
#221 opened May 22, 2025 by tristan-f-r Loading…
1
fix: friendly logging infrastructure misc. changes made to SPRAS itself
#220 opened May 22, 2025 by tristan-f-r Loading…
1
14
Algorithm similarity eval - general implementation analysis Analysis of PRA outputs
#214 opened Apr 14, 2025 by sumedhars Loading…
20
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