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@Sage-Bionetworks-Challenges

Sage Bionetworks Challenges

Sage Bionetworks hosts crowdsourcing challenges that examine questions in biology and medicine.

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  1. orca-evaluation-templates orca-evaluation-templates Public template

    Templates for creating evaluation scripts to be plugged into the Synapse ORCA workflow.

    Python 1 1

  2. sample-model-templates sample-model-templates Public template

    Templates for creating a Docker model submission on Synapse.

    Dockerfile 1 1

  3. data-to-model-challenge-workflow data-to-model-challenge-workflow Public template

    This repository will contain data-to-model challenge workflows

    Common Workflow Language 2

  4. model-to-data-challenge-workflow model-to-data-challenge-workflow Public template

    This repository will contain model to data challenge workflows

    Common Workflow Language 6

Repositories

Showing 10 of 68 repositories
  • olfactory-mixtures-prediction Public

    DREAM Olfactory Mixtures Prediction Challenge evaluation

    Sage-Bionetworks-Challenges/olfactory-mixtures-prediction’s past year of commit activity
    Python 0 Apache-2.0 0 2 1 Updated Apr 25, 2025
  • brats-infra Public

    Infrastructure for the BraTS Challenge series (2023 and beyond)

    Sage-Bionetworks-Challenges/brats-infra’s past year of commit activity
    Common Workflow Language 4 Apache-2.0 1 0 0 Updated Apr 23, 2025
  • orca-evaluation-templates Public template

    Templates for creating evaluation scripts to be plugged into the Synapse ORCA workflow.

    Sage-Bionetworks-Challenges/orca-evaluation-templates’s past year of commit activity
    Python 1 1 0 0 Updated Apr 22, 2025
  • brats-data-access Public

    Automated form validation for BraTS Data Access

    Sage-Bionetworks-Challenges/brats-data-access’s past year of commit activity
    Python 0 0 0 0 Updated Apr 18, 2025
  • Bridge2AI-shiny Public
    Sage-Bionetworks-Challenges/Bridge2AI-shiny’s past year of commit activity
    R 1 MIT 0 7 0 Updated Apr 10, 2025
  • MIDI-B-De-identification Public
    Sage-Bionetworks-Challenges/MIDI-B-De-identification’s past year of commit activity
    Common Workflow Language 0 Apache-2.0 1 0 1 Updated Apr 8, 2025
  • sample-model-templates Public template

    Templates for creating a Docker model submission on Synapse.

    Sage-Bionetworks-Challenges/sample-model-templates’s past year of commit activity
    Dockerfile 1 1 1 0 Updated Apr 1, 2025
  • Multi-seq-Data-Analysis-Post-Analysis Public

    Post-hoc analysis for scRNA-seq and scATAC-seq Data Analysis DREAM Challenge

    Sage-Bionetworks-Challenges/Multi-seq-Data-Analysis-Post-Analysis’s past year of commit activity
    HTML 1 0 0 0 Updated Sep 20, 2024
  • cnb-tools Public

    Convenience tools/functions for challenges and benchmarking on Synapse.org

    Sage-Bionetworks-Challenges/cnb-tools’s past year of commit activity
    Python 2 Apache-2.0 0 9 0 Updated Jul 15, 2024
  • pegs-evaluation Public

    Evaluation scripts for the PEGS challenge

    Sage-Bionetworks-Challenges/pegs-evaluation’s past year of commit activity
    Python 1 1 0 0 Updated Jul 10, 2024
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