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@Sage-Bionetworks-Challenges Sage Bionetworks Challenges

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    71 repositories

    • cnb-tools

      Public
      Convenience tools/functions for challenges and benchmarking on Synapse.org
      Python
      •
      Apache License 2.0
      •0•2•9•0•Updated Dec 1, 2025Dec 1, 2025

    • model-to-data-challenge-workflow

      Public template
      Workflow template for Synapse challenges that accept Docker submissions
      Common Workflow Language
      •
      Apache License 2.0
      •6•0•0•2•Updated Nov 25, 2025Nov 25, 2025

    • data-to-model-challenge-workflow

      Public template
      Workflow template for Synapse challenges that accept file predictions
      Common Workflow Language
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • jax-morphic

      Public
      Challenge infrastructure for the MorPHiC DREAM Challenge (2026)
      Common Workflow Language
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • sea-ad-dream

      Public
      Challenge infrastructure for the SEA-AD DREAM Challenge (2025)
      dream
      HTML
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • sample-model-templates

      Public template
      Templates for creating a Docker model submission to be submitted on Synapse.
      Dockerfile
      •1•2•1•0•Updated Oct 27, 2025Oct 27, 2025

    • olfactory-mixtures-prediction

      Public
      Infrastructure and evaluation scripts for the DREAM Olfactory Mixtures Prediction Challenge (2024, 2025)
      dream
      R
      •
      Apache License 2.0
      •1•0•0•1•Updated Oct 14, 2025Oct 14, 2025

    • end-als-2025

      Public archive
      Validation workflow for the EndALS 2025 Challenge
      Python
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • brats-infra

      Public
      Infrastructure for the BraTS Challenge series (2023 and beyond)
      Common Workflow Language
      •
      Apache License 2.0
      •1•5•0•0•Updated Aug 14, 2025Aug 14, 2025

    • brats_2024_2025_helper

      Public
      Python
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • multi-seq-challenge-example-models

      Public
      R
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • dream-target-2035

      Public
      Infrastructure for the First DREAM Target 2035 Drug Discovery Challenge
      dream
      Common Workflow Language
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • orca-evaluation-templates

      Public template
      Templates for creating evaluation scripts to be plugged into the Synapse ORCA workflow.
      Python
      •1•1•0•0•Updated May 12, 2025May 12, 2025

    • brats-data-access

      Public
      Automated form validation for BraTS Data Access
      Python
      •0•0•0•0•Updated Apr 18, 2025Apr 18, 2025

    • Bridge2AI-shiny

      Public
      R
      •
      MIT License
      •0•1•7•0•Updated Apr 10, 2025Apr 10, 2025

    • MIDI-B-De-identification

      Public
      Common Workflow Language
      •
      Apache License 2.0
      •1•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • Multi-seq-Data-Analysis-Post-Analysis

      Public
      Post-hoc analysis for scRNA-seq and scATAC-seq Data Analysis DREAM Challenge
      HTML
      •0•1•0•0•Updated Sep 20, 2024Sep 20, 2024

    • pegs-evaluation

      Public
      Evaluation scripts for the PEGS DREAM Challenge (2024)
      dream
      Python
      •1•1•0•0•Updated Jul 10, 2024Jul 10, 2024

    • BraTs-Validate-Users

      Public archive
      Tool to monitor Google Form responses collected in a Google Sheet
      R
      •2•0•0•0•Updated May 4, 2024May 4, 2024

    • Multi-seq-Data-Analysis-Baseline

      Public
      Baseline model for scRNA-seq and scATAC-seq Data Analysis Dream Challenge
      R
      •0•0•0•0•Updated Apr 9, 2024Apr 9, 2024

    • Multi-seq-Data-Analysis-DREAM-Challenge-Infra

      Public
      R
      •
      Apache License 2.0
      •1•1•0•0•Updated Apr 8, 2024Apr 8, 2024

    • brats-dream-challenge-infra

      Public archive
      BraTS DREAM Challenge (2021, 2022) - infrastructure
      Common Workflow Language
      •
      Apache License 2.0
      •1•0•2•1•Updated Mar 30, 2024Mar 30, 2024

    • Dynamic-AI-Challenge-Legacy-Orchestrator-Infra

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 23, 2024Feb 23, 2024

    • TB-DREAM-Challenge-Infra

      Public
      dream
      Common Workflow Language
      •
      Apache License 2.0
      •3•2•0•0•Updated Nov 28, 2023Nov 28, 2023

    • rare-x-post-analysis

      Public
      Jupyter Notebook
      •1•0•4•0•Updated Nov 20, 2023Nov 20, 2023

    • RARE-X-DREAM-Challenge-Infra

      Public
      RARE-X Challenge infrastructure (2023)
      Common Workflow Language
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 25, 2023Jul 25, 2023

    • RARE-X-DREAM-baseline-model

      Public
      A sample model for the RARE-X DREAM Challenge
      Python
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • Enclave-Challenge-Toolkit

      Public
      A suite of tools to manage challenges that are run external to Synapse but still use some of the Synapse functionality.
      Python
      •0•1•0•0•Updated May 16, 2023May 16, 2023

    • md_test_challenge-infrst

      Public
      Onboarding training activity fr data-to-model-challenge-workflow
      Common Workflow Language
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 15, 2023Feb 15, 2023

    • TB-DREAM-Challenge-Writeups

      Public
      Common Workflow Language
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 21, 2023Jan 21, 2023