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[ENH][packages/openigtlink] Add OpenIGTLink related packages #58

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RafaelPalomar merged 1 commit into from
May 27, 2025
Merged

[ENH][packages/openigtlink] Add OpenIGTLink related packages #58

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244 changes: 244 additions & 0 deletions guix-systole/packages/openigtlink.scm
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Original file line number Diff line number Diff line change
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(define-module (guix-systole packages openigtlink)
#:use-module ((guix licenses)
#:prefix license:)
#:use-module (guix download)
#:use-module (guix build-system cmake)
#:use-module (guix packages)
#:use-module (gnu packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages backup)
#:use-module (gnu packages compression)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
#:use-module (gnu packages geo)
#:use-module (gnu packages gl)
#:use-module (gnu packages gnome)
#:use-module (gnu packages image)
#:use-module (gnu packages libffi)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages ninja)
#:use-module (gnu packages pdf)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages qt)
#:use-module (gnu packages serialization)
#:use-module (gnu packages tbb)
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages web)
#:use-module (gnu packages xiph)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (guix build-system cmake)
#:use-module (guix build-system qt)
#:use-module (guix download)
#:use-module (guix gexp)
#:use-module (guix packages)
#:use-module (guix-systole packages slicer)
#:use-module (guix-systole packages ctk)
#:use-module (guix-systole packages itk)
#:use-module (guix-systole packages libarchive)
#:use-module (guix-systole packages qrestapi)
#:use-module (guix-systole packages teem)
#:use-module (guix-systole packages vtk)
#:use-module (guix-systole packages))

(define-public openigtlink
(package
(name "openigtlink")
(version "0.0.0-c512727") ;version used by PlusBuild (Plus 2.8)
(source
(origin
(method url-fetch)
(uri
"https://github.com/openigtlink/OpenIGTLink/archive/c512727425c2b7a594fabb9cd1fbfac512bf376e.tar.gz")
(sha256
(base32 "0s2rxa4igs2d354205vnp57bf81yj5fpqh91hy5v3zz34gri46j5"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags (list "-DBUILD_EXAMPLES:BOOL=OFF"
"-DBUILD_TESTING:BOOL=OFF"
"-DOpenIGTLink_SUPERBUILD:BOOL=OFF"
"-DOpenIGTLink_PROTOCOL_VERSION_2:BOOL=OFF"
"-DOpenIGTLink_PROTOCOL_VERSION_3:BOOL=ON"
"-DOpenIGTLink_ENABLE_VIDEOSTREAMING:BOOL=ON"
"-DOpenIGTLink_USE_VP9:BOOL=OFF"
;;"-DOpenIGTLink_INSTALL_PACKAGE_DIR:PATH=lib/cmake/OpenIGTLink"
"-DBUILD_SHARED_LIBS:BOOL=ON")
#:tests? #f))
(inputs (list glew))
(home-page "openigtlink.org")
(synopsis
"Free, open-source network communication library for image-guided therapy")
(description
"The OpenIGTLink Library is a C/C++ implementation of The OpenIGTLink
Protocol. OpenIGTLink is an open-source network communication interface
specifically designed for image-guided interventions. It aims to provide a
plug-and-play unified real-time communications (URTC) in operating rooms (ORs)
for image-guided interventions, where imagers, sensors, surgical robots,and
computers from different vendors work cooperatively. This URTC will ensure the
seamless data flow among those components and enable a closed-loop process of
planning, control, delivery, and feedback. The specification of OpenIGTLink is
open, and can be used without any license fee; hence OpenIGTLink is suitable for
both industrial and academic developers.")
(license license:bsd-3)))

(define-public slicer-openigtlink
(package
(name "slicer-openigtlink")
(version "0.0.0-6fbdadf1")
(source
(origin
(method url-fetch)
(uri "https://github.com/openigtlink/SlicerOpenIGTLink/archive/6fbdadf16d6ccee8e840d9d408422bec4c95e867.tar.gz")
(sha256
(base32 "0m56zqjdv87iv0p6g269kj9bjknjsaq18ijpsjawh9wi2w8ybsaj"))
(patches (search-patches
"0001-COMP-Add-conditional-build-of-UltrasoundRemoteContro.patch"
"0002-COMP-Fix-include-directories.patch"))))
(build-system cmake-build-system)
(arguments
(list #:tests? #f
#:validate-runpath? #f
#:configure-flags
#~(list
"-DSlicerOpenIGTLink_SUPERBUILD:BOOL=OFF"
"-DBUILD_TESTING:BOOL=OFF"
(string-append "-DSlicer_DIR:PATH="
#$(this-package-input "slicer-5.8")
"/lib/Slicer-5.8")
(string-append "-DOpenIGTLink_DIR:PATH="
#$(this-package-input "openigtlink")
"/lib/igtl/cmake/igtl-3.1")
(string-append "-DOpenIGTLinkIO_DIR:PATH="
#$(this-package-input "openigtlinkio")
"/lib/cmake/igtlio"))))
(inputs
(list slicer-5.8
mesa
;; QT5
qtbase-5
qtmultimedia-5
qtxmlpatterns
qtdeclarative-5
qtsvg-5
qtx11extras
qtwebengine-5
qtwebchannel-5
qttools-5
;;VTK
vtk-slicer
itk-slicer
double-conversion
freetype
gl2ps
glew
jsoncpp
libharu
libtheora
libxml++
lz4
mpich
netcdf
proj
libxt
eigen
expat
openssl-3.0
git
hdf5-1.10
libffi
libjpeg-turbo
libxinerama
mesa ;libGL equivalent
rapidjson
tbb
ctk
ctkapplauncher
libarchive-slicer
teem-slicer
vtkaddon
qrestapi
openigtlink
openigtlinkio
))
(synopsis "Slicer Extension for communication of IGT data")
(description "SlicerOpenIGTLink is a 3D Slicer extension designed to facilitate the communication between 3D Slicer and other platforms via OpenIGTLink.")
(license license:bsd-2)
(home-page "https://github.com/openigtlink/SlicerOpenIGTLink")))

(define-public openigtlinkio
(package
(name "openigtlinkio")
(version "0.0.0-a262c1f")
(source
(origin
(method url-fetch)
(uri "https://github.com/IGSIO/OpenIGTLinkIO/archive/a262c1f5e63c00831cbf67d5284f4734f8a7b143.tar.gz")
(sha256
(base32 "01y6nhv7c5m57clpql8vg1g43k4k37mvb0bvasl28r90mqm4dvsm"))))
(build-system cmake-build-system)
(arguments
(list #:tests? #f
#:validate-runpath? #f
#:configure-flags
#~(list
(string-append "-DSlicer_DIR:PATH="
#$(this-package-input "slicer-5.8")
"/lib/Slicer-5.8")
(string-append "-DOpenIGTLink_DIR:PATH="
#$(this-package-input "openigtlink")
"/lib/igtl/cmake/igtl-3.1"))))
(inputs
(list slicer-5.8
mesa
;; QT5
qtbase-5
qtmultimedia-5
qtxmlpatterns
qtdeclarative-5
qtsvg-5
qtx11extras
qtwebengine-5
qtwebchannel-5
qttools-5
;;VTK
vtk-slicer
itk-slicer
double-conversion
freetype
gl2ps
glew
jsoncpp
libharu
libtheora
libxml++
lz4
mpich
netcdf
proj
libxt
eigen
expat
openssl-3.0
git
hdf5-1.10
libffi
libjpeg-turbo
libxinerama
mesa ;libGL equivalent
rapidjson
tbb
ctk
ctkapplauncher
libarchive-slicer
teem-slicer
vtkaddon
qrestapi
openigtlink))
(synopsis "Library for interfacing to openigtlink/OpenIGTLink, dependent on VTK and Qt. Based on openigtlink/OpenIGTLinkIF")
(description "OpenIGTLinkIO contains several wrapper layers on top of OpenIGTLink. The code originates from OpenIGTLink/OpenIGTLinkIF. The main intent of the library is to share igtl code between Slicer, CustusX, IBIS, MITK and other systems.")
(license license:bsd-2)
(home-page "https://github.com/IGSIO/OpenIGTLinkIO")))
64 changes: 64 additions & 0 deletions ...atches/slicer-openigtlink/0001-COMP-Add-conditional-build-of-UltrasoundRemoteContro.patch
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From 4ce7337df8e230f6ce58d89e2dcc242d0919a6b8 Mon Sep 17 00:00:00 2001
From: Rafael Palomar <[email protected]>
Date: Fri, 9 May 2025 21:46:31 +0200
Subject: [PATCH 1/2] COMP: Add conditional build of UltrasoundRemoteControl

---
CMakeLists.txt | 38 +++++++++++++++++++++-----------------
1 file changed, 21 insertions(+), 17 deletions(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 6f43133..a9537af 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -40,26 +40,30 @@ endif()
add_subdirectory(OpenIGTLinkIF)
add_subdirectory(OpenIGTLinkRemote)
add_subdirectory(PlusRemote)
-add_subdirectory(UltrasoundRemoteControl)
-add_subdirectory(GenericSerialDeviceRemoteControl)
+if(Slicer_USE_PYTHONQT)
+ add_subdirectory(UltrasoundRemoteControl)
+ add_subdirectory(GenericSerialDeviceRemoteControl)
+endif()
## NEXT_MODULE

-#-----------------------------------------------------------------------------
-# Generate SlicerOpenIGTLinkConfig.cmake file
-# Add OpenIGTLink and OpenIGTLinkIO targets to SlicerOpenIGTLinkConfig.cmake file
-set(SlicerOpenIGTLink_CUSTOM_CONFIG "
+if(${EXTENSION_NAME}_SUPERBUILD)
+ #-----------------------------------------------------------------------------
+ # Generate SlicerOpenIGTLinkConfig.cmake file
+ # Add OpenIGTLink and OpenIGTLinkIO targets to SlicerOpenIGTLinkConfig.cmake file
+ set(SlicerOpenIGTLink_CUSTOM_CONFIG "
include(\"${OpenIGTLink_DIR}/OpenIGTLinkConfig.cmake\")
include(\"${OpenIGTLinkIO_DIR}/OpenIGTLinkIOConfig.cmake\")
")
-include(${Slicer_EXTENSION_GENERATE_CONFIG})
+ include(${Slicer_EXTENSION_GENERATE_CONFIG})

-#-----------------------------------------------------------------------------
-# Packaging
-set(EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS)
-list(APPEND EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS "${OpenIGTLink_DIR};OpenIGTLink;RuntimeLibraries;/")
-list(APPEND EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS "${OpenIGTLinkIO_DIR};OpenIGTLinkIO;RuntimeLibraries;/")
-set(${EXTENSION_NAME}_CPACK_INSTALL_CMAKE_PROJECTS "${EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS}" CACHE STRING "List of external projects to install" FORCE)
-list(APPEND CPACK_INSTALL_CMAKE_PROJECTS "${CMAKE_BINARY_DIR};${EXTENSION_NAME};ALL;/")
-list(APPEND CPACK_INSTALL_CMAKE_PROJECTS "${${EXTENSION_NAME}_CPACK_INSTALL_CMAKE_PROJECTS}")
-include(${CMAKE_CURRENT_SOURCE_DIR}/CMake/SlicerBlockInstallVP9.cmake)
-include(${Slicer_EXTENSION_CPACK})
+ #-----------------------------------------------------------------------------
+ # Packaging
+ set(EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS)
+ list(APPEND EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS "${OpenIGTLink_DIR};OpenIGTLink;RuntimeLibraries;/")
+ list(APPEND EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS "${OpenIGTLinkIO_DIR};OpenIGTLinkIO;RuntimeLibraries;/")
+ set(${EXTENSION_NAME}_CPACK_INSTALL_CMAKE_PROJECTS "${EXTENSION_CPACK_INSTALL_CMAKE_PROJECTS}" CACHE STRING "List of external projects to install" FORCE)
+ list(APPEND CPACK_INSTALL_CMAKE_PROJECTS "${CMAKE_BINARY_DIR};${EXTENSION_NAME};ALL;/")
+ list(APPEND CPACK_INSTALL_CMAKE_PROJECTS "${${EXTENSION_NAME}_CPACK_INSTALL_CMAKE_PROJECTS}")
+ include(${CMAKE_CURRENT_SOURCE_DIR}/CMake/SlicerBlockInstallVP9.cmake)
+ include(${Slicer_EXTENSION_CPACK})
+endif()
--
2.49.0

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