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tbprofiler-v6.5.0 #229

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2 changes: 1 addition & 1 deletion conda_envs/magma-tbprofiler-env.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- bioconda
- defaults
dependencies:
- tb-profiler=6.3.0
- tb-profiler=6.5.0
2 changes: 1 addition & 1 deletion conf/apptainer.config
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Expand Up @@ -39,7 +39,7 @@ process {

withName:
'.*TBPROFILER.*' {
container = "ghcr.io/torch-consortium/magma/biocontainer-tbprofiler:6.3.0--1"
container = "ghcr.io/torch-consortium/magma/biocontainer-tbprofiler:6.5.0"
}

withName:
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2 changes: 1 addition & 1 deletion conf/docker.config
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Expand Up @@ -37,7 +37,7 @@ process {

withName:
'.*TBPROFILER.*' {
container = "ghcr.io/torch-consortium/magma/biocontainer-tbprofiler:6.3.0--1"
container = "ghcr.io/torch-consortium/magma/biocontainer-tbprofiler:6.5.0"
}

withName:
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4 changes: 2 additions & 2 deletions conf/singularity.config
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Expand Up @@ -39,7 +39,7 @@ process {

withName:
'TBPROFILER.*' {
container = "ghcr.io/torch-consortium/magma/biocontainer-tbprofiler:6.3.0"
container = "ghcr.io/torch-consortium/magma/biocontainer-tbprofiler:6.5.0"
}

withName:
Expand All @@ -62,4 +62,4 @@ process {

singularity {
enabled = true
}
}
6 changes: 3 additions & 3 deletions containers/biocontainer-tbprofiler/Dockerfile
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Expand Up @@ -23,16 +23,16 @@
## You should have received a copy of the GNU General Public License
## along with this program . If not, see <http://www.gnu.org/licenses/>.
##
FROM quay.io/biocontainers/tb-profiler:6.3.0--pyhdfd78af_0 AS base
FROM quay.io/biocontainers/tb-profiler:6.5.0--pyhdfd78af_0 AS base

FROM base AS tbprofiler

#NOTE: Just update the tb-profiler databaes to rely upon the relevant branch.

# WHO-v2 specific tag https://github.com/jodyphelan/tbdb/releases/tag/who-v2-strict
# COMMIT bdace1f82d948ce0001e1dade6eb93d2da9c47e5
# COMMIT bdace1f82d948ce0001e1dade6eb93d2da9c47e5

# MAGMA branch
# MAGMA branch
#RUN tb-profiler update_tbdb --branch MAGMA --logging DEBUG

RUN tb-profiler update_tbdb --commit 30f8bc37df15affa378ebbfbd3e1eb4c5903056e --logging DEBUG
2 changes: 1 addition & 1 deletion containers/biocontainer-tbprofiler/build.sh
100644 → 100755
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Expand Up @@ -29,7 +29,7 @@ set -uex
# NOTE: Make sure you've set the environment correctly and are logged in to the registry.


TBPROFILER_VERSION=6.3.0
TBPROFILER_VERSION=6.5.0
DOCKER_NAMESPACE="ghcr.io/torch-consortium/magma"

CONTAINER_NAME="$DOCKER_NAMESPACE/biocontainer-tbprofiler:$TBPROFILER_VERSION"
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