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Releases: TileDB-Inc/TileDB-VCF

0.4.1

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@Shelnutt2 Shelnutt2 released this 11 May 18:12
57e7587

This adds support for duplicates in the dataset. There is a new flag CLI flags, --no-duplicates to disable this new behavior. There is also a corresponding python dataset option.

Additional changes include:

  • Automatically build docker images #86 #87 #88
  • Add duplicate support #82 #90
  • Add option for dumping new TileDB statistics #91

0.4.0

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@Shelnutt2 Shelnutt2 released this 04 May 16:31
e723c43

This release update to TileDB 2.0.0, which includes performance optimizations and memory improvements.

Changes Includes:

  • Add export unit tests for non-contiguous samples #80
  • Split coordinates internally for TileDB 2.0.0 #81
  • Update versions for python, java and spark APIs automatically based on git tags #83 #84 #85

0.3.5

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@Shelnutt2 Shelnutt2 released this 22 Apr 15:14
85ed7b8

Changes include:

  • Fix segfault on sample name access in read #79

0.3.4

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@Shelnutt2 Shelnutt2 released this 20 Apr 17:17
1e469a0

Changes include:

  • Split Spark into a Java API and a Spark API #66
  • Fix typo in docs #69
  • Add aws session token support #70
  • Fix error in python 3.6 support #74
  • Fix segfault with non-continuous samples on read #78
  • Update gitignore #77

0.3.3

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@Shelnutt2 Shelnutt2 released this 31 Mar 13:30
9c92059

Changes include:

  • Fix native lib loading #64
  • Add better int overflow checks in spark. Put warning about arrow buffers over 2GB #68
  • Add checksum filter support, defaulting to SHA256 for arrays #67

0.3.2

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@Shelnutt2 Shelnutt2 released this 23 Mar 19:39
865dbf2

Changes include:

  • Add destructor for reader, fixes segfault with spark limits #60
  • Add check for tiledb query status in read_current_batch #62
  • Add spark docs and local publishing #61
  • Partition regions only on the nonEmptyDomain #63
  • Reset the user buffer sizes on at the start of a read invocation #65

0.3.1

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@ihnorton ihnorton released this 05 Mar 03:31
  • Build system improvements to support building with(in) a conda environment #59

0.3.0

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@Shelnutt2 Shelnutt2 released this 19 Feb 18:38
dcad25c
  • Remove VFS usage from dataset open #46
  • Add CONTRIBUTING and update README #53
  • Support passing TileDB-Py or dictionary for python configs #52
  • Support reading TileDB Cloud registered datasets #54
  • Fix bug with batches crossing tile boundaries for writes #57
  • Update TileDB to 1.7.5 for superbuild #58

0.2.2

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@tdenniston tdenniston released this 09 Dec 15:16
5b48a0b
Fix TBB threads config parameter causing context allocation errors. (…

0.2.1: Bump urllib3 from 1.24.1 to 1.24.2 in /apis/aws-batch (#39)

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@tdenniston tdenniston released this 13 Nov 18:51
  • README updates
  • Bump urllib3 from 1.24.1 to 1.24.2 in /apis/aws-batch (#39)