TileDB-VCF 0.38.0

What's Changed

• Update TileDB to release 2.28.0 (PR #818)
• Retry vcf_open up to 3 times (PR #801)

Full Changelog: 0.37.0...0.38.0

0.37.0

What's Changed

• Remove Spark and Dask support by @gspowley in #786
• Change VLA code by using std::vector by @dudoslav in #787
• Migrate to macos-13 runner image by @dudoslav in #793
• Run CI on Ubuntu 24 (GCC 13) by @jdblischak in #788
• More robust non-empty buffer check during ingestion by @gspowley in #792
• Upgrade to TileDB 2.27.0 by @gspowley in #789
• Remove spark asset release CI stage by @gspowley in #794

Deprecations

• Spark and Dask are no longer supported.

New Contributors

• @dudoslav made their first contribution in #787

Full Changelog: 0.36.0...0.37.0

0.36.0

Deprecation announcements

• Support for Dask will be removed in version 0.37.0.
• Support for Spark will be removed in version 0.37.0.

What's Changed

• Bump nightly build release branch to 2.26 by @jdblischak in #773
• Upgrade to TileDB 2.26.1 by @gspowley in #774
• Build with NumPy 2 by @gspowley in #762
• type return incorrectly inst an object by @spencerseale in #784

New Contributors

• @spencerseale made their first contribution in #784

Full Changelog: 0.35.0...0.36.0

0.35.1

Deprecation announcements

• Support for Dask will be removed in version 0.37.0.
• Support for Spark will be removed in version 0.37.0.

Changes:

• dece9c7 Upgrade to TileDB 2.26.1 (#774) (#775)

This list of changes was auto generated.

0.35.0

Deprecation announcements

• Support for Dask will be removed in version 0.37.0.
• Support for Spark will be removed in version 0.37.0.

Changes:

• 4a8be5e Fix delete dataset test (#772)
• bb9806d Add Dataset delete to the Python API (#770)
• 14aff42 Upgrade to TileDB 2.26.0 (#769)
• 00222ac Update to allow multiple calls to read_iter (#771)
• ade7a50 Add Dataset close and context manager support to the Python API (#767)
• b9fd438 Add Python API for sample deletion (#759)

This list of changes was auto generated.

0.34.2

Changes:

• 867f130 Handle legacy stats arrays (#761)
• 6282fc3 Fix nightly build by updating source build of TileDB-Py (#756)

This list of changes was auto generated.

0.34.1

Changes:

• bbe02af remove additional deprecated API calls (#755)
• cb54609 Remove deprecated API calls (#753)
• 88ac82a reverse duplicated alt_string_v3 in variant stats (#754)
• ec45c63 Add Hail-like AC, AN, and AF computation to variant stats V3 (#731)

This list of changes was auto generated.

0.34.0

Changes:

• be5a5c5 Upgrade Embedded to 2.25.0 (#748)

This list of changes was auto generated.

0.33.3

Changes:

• 82f0e62 Add the metadata group to the VCF dataset (#751)
• 3262656 remove deprecated AWS Batch API (#750)
• 78ac939 update htslib to 1.20 (#746)

This list of changes was auto generated.

0.33.2

Changes:

• 6da9917 Upgrade Embedded to 2.24.2 (#744)

This list of changes was auto generated.