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@MaximeBICMTL MaximeBICMTL commented Jan 9, 2026

Description

Extract the EEG/phyisology-related typed database configuration getters from #1335 and adopt them in the current EEG/phyisology pipelines.

Details

  • Add an env parameter to the Eeg and Physiological constructors to access the typed database abstraction.
  • Add EEG/physiology-related getters to lib.config.
  • Use lib.config.get_* instead of the old Config objects to get the related configuration values.

Future works

The next PR (which builds upon this one and #1359) will be to factorize the chunking subscript calling.

@github-actions github-actions bot added the Language: Python Issue or PR related to the Python codebase label Jan 9, 2026
@MaximeBICMTL MaximeBICMTL added Category: Refactor Issue or PR that aims to improve the existing code Complexity: Simple Issue or PR that should be simple to implement, review, or test labels Jan 9, 2026
@MaximeBICMTL MaximeBICMTL force-pushed the eeg_orm_config branch 2 times, most recently from 30f3bb3 to fdad96a Compare January 9, 2026 07:40
@MaximeBICMTL MaximeBICMTL added the Pipeline: BIDS importer PR or issue related to the BIDS importer label Jan 10, 2026
@MaximeBICMTL MaximeBICMTL changed the base branch from main to bids_staging_branch January 16, 2026 07:12
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Labels

Category: Refactor Issue or PR that aims to improve the existing code Complexity: Simple Issue or PR that should be simple to implement, review, or test Language: Python Issue or PR related to the Python codebase Pipeline: BIDS importer PR or issue related to the BIDS importer

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