NEUROSEG v1.0.1

NEUROSEG is a Jupyter-based workflow for brain and organoid fluorescence imaging: StarDist nuclear segmentation, optional ROI-restricted analysis, and three ways to call cells positive for markers (average intensity, colocalization / morphology, or APOC object classification). Downstream steps support multi-marker subpopulations and Napari QC visualization.

This release contains the same core functionalities tested across OS (win-64, linux-64, osx-arm64) in v1.0.0 but with the following changes:

• Updated environment setup instructions
• Citation instructions
• README.md refactor for improved readability

#TODO: Include the rest of the YouTube tutorial videos.

NEUROSEG v1.0.0

NEUROSEG is a Jupyter-based workflow for brain and organoid fluorescence imaging: StarDist nuclear segmentation, optional ROI-restricted analysis, and three ways to call cells positive for markers (average intensity, colocalization / morphology, or APOC object classification). Downstream steps support multi-marker subpopulations and Napari QC visualization.

Initial release will all core functionalities tested across OS (win-64, linux-64, osx-arm64).

#TODO: Include the rest of the tutorial videos.