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98 changes: 98 additions & 0 deletions datasets/humancellatlas.yaml
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Name: Human Cell Atlas

Description: "The Human Cell Atlas (HCA) is a collaborative community of
international scientists. Our mission is to create comprehensive reference
maps of all the cells in the human body as a basis for both understanding
human health and diagnosing, monitoring, and treating disease. The HCA
registry has more than one thousand member scientists from hundreds of
institutions around the world. The project is steered and governed by an
Organizing Committee, co-chaired by Aviv Regev and Sarah Teichmann."

Documentation: https://data.humancellatlas.org/

Contact: https://data.humancellatlas.org/contact

ManagedBy: UC Santa Cruz Genomics Institute, University of California, Santa Cruz (UCSC)

UpdateFrequency: Monthly

Tags:
- life sciences
- biology
- cell biology
- genome
- genomic
- transcriptomics
- gene expression
- single-cell transcriptomics
- cell imaging
- Homo sapiens
- Mus musculus

License: https://data.humancellatlas.org/about/data-use-agreement

Citation: "The URL for the HCA Data Portal, https://data.humancellatlas.org, can
be used as the citation for data obtained from the HCA. Alternatively, you can
cite: Regev A., et al. 2017. The Human Cell Atlas. Elife. Dec 5;6. pii:
e27041. doi: 10.7554/eLife.27041."

Resources:
- Description: "An S3 bucket containing all publicly accessible data files in
the Human Cell Atlas. The bucket layout and access procedures are
documented at

https://github.com/DataBiosphere/azul/blob/develop/docs/mirror.rst

and metadata can be viewed at

https://explore.data.humancellatlas.org/

or accessed programmatically at

https://service.azul.data.humancellatlas.org/"
ARN: arn:aws:s3:::humancellatlas
Region: us-east-1
Type: S3 Bucket
Explore:
- "[Data Browser UI](https://explore.data.humancellatlas.org/)"
- "[Azul REST Web Service](https://service.azul.data.humancellatlas.org/)"

DataAtWork:
Publications:
- Title: "The Human Cell Atlas White Paper"
URL: https://arxiv.org/abs/1810.05192
AuthorName: "Aviv Regev, Sarah Teichmann, Orit Rozenblatt-Rosen, Michael
Stubbington, Kristin Ardlie, Ido Amit, Paola Arlotta, Gary Bader,
Christophe Benoist, Moshe Biton, Bernd Bodenmiller, Benoit Bruneau,
Peter Campbell, Mary Carmichael, Piero Carninci, Leslie Castelo-Soccio,
Menna Clatworthy, Hans Clevers, Christian Conrad, Roland Eils, Jeremy
Freeman, Lars Fugger, Berthold Goettgens, Daniel Graham, Anna Greka, Nir
Hacohen, Muzlifah Haniffa, Ingo Helbig, Robert Heuckeroth, Sekar
Kathiresan, Seung Kim, Allon Klein, Bartha Knoppers, Arnold Kriegstein,
Eric Lander, Jane Lee, Ed Lein, Sten Linnarsson, Evan Macosko, Sonya
MacParland, Robert Majovski, Partha Majumder, John Marioni, Ian
McGilvray, Miriam Merad, Musa Mhlanga, Shalin Naik, Martijn Nawijn,
Garry Nolan, Benedict Paten, Dana Pe'er, Anthony Philippakis, Chris
Ponting, Steve Quake, Jayaraj Rajagopal, Nikolaus Rajewsky, Wolf Reik,
Jennifer Rood, Kourosh Saeb-Parsy, Herbert Schiller, Steve Scott, Alex
Shalek, Ehud Shapiro, Jay Shin, Kenneth Skeldon, Michael Stratton, Jenna
Streicher, Henk Stunnenberg, Kai Tan, Deanne Taylor, Adrian Thorogood,
Ludovic Vallier, Alexander van Oudenaarden, Fiona Watt, Wilko Weicher,
Jonathan Weissman, Andrew Wells, Barbara Wold, Ramnik Xavier, Xiaowei
Zhuang, Human Cell Atlas Organizing Committee"
- Title: "The network effect: studying COVID-19 pathology with the Human Cell Atlas"
URL: https://www.nature.com/articles/s41580-020-0267-3
AuthorName: "Sarah Teichmann, Aviv Regev"
- Title: "The Human Cell Atlas from a cell census to a unified foundation model"
URL: https://www.nature.com/articles/s41586-024-08338-4
AuthorName: "Jennifer E. Rood, Samantha Wynne, Lucia Robson, Anna
Hupalowska, John Randell, Sarah A. Teichmann & Aviv Regev"
- Title: "The Human Cell Atlas: towards a first draft atlas"
URL: https://www.nature.com/collections/jccbbdahji
AuthorName: "Various authors"
- Title: "The Human Cell Atlas: towards a first draft atlas"
URL: https://www.nature.com/immersive/d42859-024-00060-5/index.html
AuthorName: "Various authors"

ADXCategories:
- Healthcare & Life Sciences Data