Release v8.2.0

Improvements

• [KBDEV-1360] Update schema version dependency to ~4.1.0 (#188)
• [KBDEV-1386; CLININFO-811] Update EvidenceLevel ontology data (#188)
• [KBDEV-1333] Update CGL loader (#186)
• [KBDEV-1325] Add source ANZCTR (#182)
• [KBDEV-1305] Update Disease ontology data (#179)
• [KBDEV-1297; DEVSU-2095] Update Signature and Vocab ontology data (#177)

Bugfixes

• Remove old output.json file (#187)
• [KBDEV-1341] Fix CGL URL (#184)
• [KBDEV-1337] Fix orderPreferredOntologyTerms() (#183)
• [KBDEV-1303] Fix OncoTree loader (#178)

v8.1.1

Bugfixes

• [KBDEV-1295] Fix CIViC EvidenceItems GraphQL query #174

Ontology data

• [DEVSU-2095] Add ebv to data/signatures.json #173

v8.1.0

Improvements

• [KBDEV-1224] Add HLA signatures to ontology data
• [KBDEV-1240] Add update capabilities to Entrez gene loader
• [KBDEV-1243] Refactor CIViC loader and add support for factor and new fusion format

Bugfixes

• [KBDEV-993] Update MOA loader for new record format
• [KBDEV-994] Fix displayName formatting for Signatures from MOA loader
• [KBDEV-1142] Update Chembl loader for new content name
• [KBDEV-1152] Fix displayName formatting for chromosomes from ontology data
• [KBDEV-1154] Fix displayName formatting for records from DO and OncoTree
• [KBDEV-1231] Change wildtype vocabulary defenition in ontology data
• [PR#163] Update cBioportal and CGI URLs in Snakefile

v8.0.2

BugFixes

• [KBDEV-1047] - CIViC loader now updates Statements again
• CIViC loader Molecular Profile parsing bug resolved

v8.0.1

BugFixes

• [KBDEV-1200] - Fix pagination bug in clinicaltrialsgov loader
• [KBDEV-1202] - Update CIViC loader to v2.4 API Schema

v8.0.0

Breaking Change

• [KBDEV-1176, KBDEV-1194] - get updated studies from clinicaltrialsgov API

v7.0.1

Improvement

[KBDEV-1163] - Remove loading refseq in ensembl loader.

v7.0.0

Breaking Changes

• [KBDEV-1158] - clinicaltrial loader now uses api upload instead of file
• [KBDEV-1167] - cancergenomeinterpreter now uses biomarkers file instead of biomarker_per_variant
• [KBDEV-1135] - ncit loader updated to use latest file
• [KBDEV-1139] - ensembl loader updated to use latest file with proteins

New Features

• all_source: New loader to upload all sources

BugFixes

• Snakefile: Fix loading errors
• [KBDEV-1050] - docm: Remap some statements to "recurrent" relevance term
• [KBDEV-1086] - vocabulary ontology data: Link "copy variant" to "mutation" instead of "structural variant"
• ncit: Use preferredName to handle the drugs with different id but the same name
• moa: Handle empty string

Improvements

• [KBDEV-957] - sources: Add ESMO, tso500 and Profile as source
• [KBDEV-1120] - evidenceLevels ontology data: Add more Profile evidenceLevels
• [KBDEV-1084] - vocabulary ontology data: Add "cancer gene"
• Snakefile: Add all_local and all_ontologies

v6.4.0

New Features

• Support for complex (more than one variant) Molecular profiles in Civic loader

v6.3.3

BugFixes

• Fix CIViC loader for API schema change on Molecular Profiles & EvidenceItems type/significance/direction.