Release v1.2.2

Bugfixes

• [SDEV-5193] pcptgr type crash #79
• [DEVSU-2744] update copy change column name in test data #78

Release v1.2.0

Improvements

• [DEVSU-2616] check projects in report async upload. if not exist, create one #59
• [DEVSU-2617] Add entrypoint to load a report from json #71
• [KBDEV-1163 / KBDEV-1342] Add matching tests for Ensembl features #74
• [KBDEV-1306] Update get_kb_disease_matches() to use subgraphs route #73
• [KBDEV-1328] Add login_demo() for GraphKBConnection #72
• Add py.typed at root and delete unnessary files #76
• Update ipr command_interface() #76

Bugfixes

• [KBDEV-1310] Fix ipr test in test_upload.py #68
• Add py.typed at root and delete unnessary files #76
• Update ipr command_interface() #76

Release v1.1.0

Improvements

• [DEVSU-2625] Add option to not drop test reports #58
• [KBDEV-1246 / KBDEV-1298] Matching TMB and MSI as Signature variants #51 / #62
• [SDEV-4811 / KBDEV-1298] Add support for genomeTmb #62
• [KBDEV-1227] Matching to Cosmic & dMMR #62
• [KBDEV-1224] Matching to HLA alleles #62
• [DEVSU-2537] Splitting out matching logic from ipr_report() #62

Bugfixes

• [KBDEV-1266] Refresh login to GraphKB only when needed #50
• Fix returned type of ipr/ipr.py::get_kb_disease_matches() #62

Release v1.0.0

Breaking Changes

• [KBDEV-1227] Signature variants support #42
• [DEVSU-2550, DEVSU-2477] Multivariant statements handling #45, #37

Improvements

• [KBDEV-1236] Added extra type checking for variant matching #25
• [DEVSU-2488] Move reformatting upstream get_cancer_predisposition_info() #41
• [DEVSU-2494] Add custom text to analysis summary #44, #46
• [SDEV-4409] Deprecate get_cancer_predisposition_info() & get_pharmacogenomic_info() #35
• Add image to test_upload contents #48

Bugfixes

• [KBDEV-1266] Fix redundand disease matching #47
• [SDEV-4605, SDEV-4601] Remove pattern check on chromosomeBand #43
• [DEVSU-2606], Combine chr with chromosomeBand #53

Release v0.1.2

What's Changed

• fix package data by @elewis2 in #32

Full Changelog: v0.1.1...v0.1.2

Release v0.1.1

What's Changed

• SDEV-4431 - bugfix - content.spec.json not in distribution by @dustinbleile in #26

Release v0.1.0

Release/v0.1.0

First release of merged pori_ipr_python and pori_graphkb_python packages as pori_python.

Improvement:

merge pori_ipr_python and pori_graphkb_python adaptors
update test suite for use with external PORI deployments; skip tests that will only work on the BCGSC PORI deployment (where possible, replace with tests on other data)
DEVSU-2348: add function to fetch associated gene list per variant returned by cancer predisposition and pharmacogenomic gene variant functions
DEVSU-2349: add option to load reports by pori-ipr-api reports-async endpoint
SDEV-4409: update gene exclude lists
SDEV-4409: use typing extension > 4.4; remove max version on requests
KBDEV-1231: add test to ensure no incorrect matches to wildtype
Bugfix:

DEVSU-2348: fix test of pharmocogenomic gene list
SDEV-4409: use tqdm for progress bar
SDEV-4431: update mypy types