Updating tools/rna_tools/ribotaper from version 1.3.1a to 1.3.1#1825
Updating tools/rna_tools/ribotaper from version 1.3.1a to 1.3.1#1825gxydevbot wants to merge 14 commits intobgruening:masterfrom
Conversation
| <tests> | ||
| <test expect_num_outputs="8"> | ||
| <param name="annotation_path" value="annotation_path.tgz"/> | ||
| <param name="annotation_path" value="annotation_path.tgz" ftpye="tar"/> |
There was a problem hiding this comment.
The issue is that it is not a tgz, but the extension is tgz. Then it chooses the wrong command for unpacking. Specifying the ftype as tar fixed the issue.
There was a problem hiding this comment.
äh, ok, why then not renaming the file so the ending fits the content :)
There was a problem hiding this comment.
I was testing and it is a lazy fix ;) I will rename the file.
it exists and the previous linting worked |
|
File-size also fails, and you can add a label to skip linting of the URLs |
|
strange! why didn't it complain here? https://github.com/bgruening/galaxytools/actions/runs/24710190892 |
|
I checked again and the files are actually gzipped. Is there a way to skip the file size check? |
|
@bgruening I think the issue is that with .tgz extension, it is already decompressing before running the tool. Hence, |
Updated the annotation_path parameter to include 'tgz' format.
3 participants
Hello! This is an automated update of the following tool: tools/rna_tools/ribotaper. I created this PR because I think the tool's main dependency is out of date, i.e. there is a newer version available through conda.
I have updated tools/rna_tools/ribotaper from version 1.3.1a to 1.3.1.
Project home page: https://ohlerlab.mdc-berlin.de/software/RiboTaper_126
For any comments, queries or criticism about the bot, not related to the tool being updated in this PR, please create an issue here.
If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.