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Refactor to remove duplicated sample_name to sample_id scrubbing logic

Status: Open.

#344 In biocore/kl-metapool;

· AmandaBirmingham opened on Nov 5, 2025

Fix dependence on Illumina (only) file name format to determine sample name

Status: Open.

#341 In biocore/kl-metapool;

· AmandaBirmingham opened on Nov 3, 2025

Write tests for/add NaN handling of dataframe input case of <code>metapool.format_pooling_echo_pick_list()</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#340 In biocore/kl-metapool;

· AmandaBirmingham opened on Nov 1, 2025

Refactor scripts (seqpro, seqpro_mf) and supporting classes into qp-klp

Status: Open.

#335 In biocore/kl-metapool;

· AmandaBirmingham opened on Sep 10, 2025

Add replicate support for metatranscriptomics

Status: Open.

#324 In biocore/kl-metapool;

· AmandaBirmingham opened on Aug 27, 2025

Centralize manipulation of de-replicated dataframe to PlateReplication

enhancementNew feature or requestNew feature or request

Status: Open.

#321 In biocore/kl-metapool;

· AmandaBirmingham opened on Aug 1, 2025

Missing required sample sheet columns are filled in blank without triggering an error

Status: Open.

#305 In biocore/kl-metapool;

· AmandaBirmingham opened on Jun 13, 2025

Duplication of sample sheet field names in prep module

Status: Open.

#303 In biocore/kl-metapool;

· AmandaBirmingham opened on Jun 13, 2025

Consolidate files to be either txt or csv.

Status: Open.

#285 In biocore/kl-metapool;

· antgonza opened on Apr 3, 2025

Centralize or copy shared current metaG matrix tube functionality into amplicon notebook

Status: Open.

#274 In biocore/kl-metapool;

· AmandaBirmingham opened on Jan 13, 2025

Centralize or copy shared current metaG matrix tube functionality into metaT notebook

Status: Open.

#273 In biocore/kl-metapool;

· AmandaBirmingham opened on Jan 13, 2025

Change error to strong warning for duplicate sample names in sample accession files for matrix tube notebook?

Status: Open.

#272 In biocore/kl-metapool;

· AmandaBirmingham opened on Jan 13, 2025