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Update processing.py #303

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7 changes: 4 additions & 3 deletions cameo/strain_design/heuristic/evolutionary/processing.py
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Expand Up @@ -49,9 +49,10 @@ def process_reaction_knockout_solution(model, solution, simulation_method, simul
"""

with model:
reactions = [model.reactions.get_by_id(rid) for rid in solution]
for reaction in reactions:
reaction.knock_out()
genes = [model.genes.get_by_id(gid).name for gid in solution]

for gene in genes:
gene.knock_out()

flux_dist = simulation_method(model, reactions=objective_function.reactions,
objective=biomass, **simulation_kwargs)
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