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6 changes: 6 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,12 @@ Write the date in place of the "Unreleased" in the case a new version is release

- `Composite` structure family to enable direct access to table columns in a single namespace.

### Maintenance

- Extract API key handling
- Extract scope fetching and checking
- Refactor router construction


## 0.1.0-b20 (2025-03-07)

Expand Down
5 changes: 3 additions & 2 deletions docs/source/explanations/access-control.md
Original file line number Diff line number Diff line change
Expand Up @@ -70,6 +70,7 @@ integrate with our proposal system.
import cachetools
import httpx
from tiled.queries import In
from tiled.scopes import PUBLIC_SCOPES


# To reduce load on the external service and to expedite repeated lookups, use a
Expand Down Expand Up @@ -102,12 +103,12 @@ class PASSAccessPolicy:
)

def allowed_scopes(self, node, principal, path_parts):
return {"read:metadata", "read:data"}
return PUBLIC_SCOPES

def filters(self, node, principal, scopes, path_parts):
queries = []
id = self._get_id(principal)
if not scopes.issubset({"read:metadata", "read:data"}):
if not scopes.issubset(PUBLIC_SCOPES):
return NO_ACCESS
try:
response = response_cache[id]
Expand Down
1 change: 0 additions & 1 deletion docs/source/reference/service.md
Original file line number Diff line number Diff line change
Expand Up @@ -79,7 +79,6 @@ When registering new types, make reference to the
.. autosummary::
:toctree: generated

tiled.media_type_registration.serialization_registry
tiled.media_type_registration.SerializationRegistry
tiled.media_type_registration.SerializationRegistry.register
tiled.media_type_registration.SerializationRegistry.media_types
Expand Down
12 changes: 3 additions & 9 deletions tiled/_tests/test_access_control.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,16 +5,12 @@
from fastapi import HTTPException
from starlette.status import HTTP_403_FORBIDDEN, HTTP_404_NOT_FOUND

from ..access_policies import (
ALL_SCOPES,
PUBLIC_SCOPES,
SimpleAccessPolicy,
SpecialUsers,
)
from ..access_policies import SimpleAccessPolicy, SpecialUsers
from ..adapters.array import ArrayAdapter
from ..adapters.mapping import MapAdapter
from ..client import Context, from_context
from ..client.utils import ClientError
from ..scopes import ALL_SCOPES, PUBLIC_SCOPES
from ..server.app import build_app_from_config
from ..server.core import NoEntry
from .utils import enter_username_password, fail_with_status_code
Expand All @@ -36,8 +32,6 @@ async def allowed_scopes(self, node, principal, path_parts):
# If this is being called, filter_access has let us get this far.
if principal is SpecialUsers.public:
allowed = PUBLIC_SCOPES
elif principal.type == "service":
allowed = self.scopes
else:
allowed = self.scopes

Expand All @@ -64,7 +58,7 @@ async def allowed_scopes(self, node, principal, path_parts):
)
remove_scope = node.metadata().get("remove_scope", None)
if remove_scope in allowed:
allowed = allowed.copy()
allowed = set(allowed)
allowed.remove(remove_scope)
return allowed

Expand Down
3 changes: 2 additions & 1 deletion tiled/_tests/test_protocols.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
from numpy.typing import NDArray
from pytest_mock import MockFixture

from tiled.access_policies import ALL_ACCESS, ALL_SCOPES
from tiled.access_policies import ALL_ACCESS
from tiled.adapters.awkward_directory_container import DirectoryContainer
from tiled.adapters.protocols import (
AccessPolicy,
Expand All @@ -19,6 +19,7 @@
SparseAdapter,
TableAdapter,
)
from tiled.scopes import ALL_SCOPES
from tiled.server.schemas import Principal, PrincipalType
from tiled.structures.array import ArrayStructure, BuiltinDtype
from tiled.structures.awkward import AwkwardStructure
Expand Down
4 changes: 1 addition & 3 deletions tiled/access_policies.py
Original file line number Diff line number Diff line change
@@ -1,12 +1,10 @@
from functools import partial

from .queries import In, KeysFilter
from .scopes import SCOPES
from .scopes import ALL_SCOPES, PUBLIC_SCOPES
from .utils import Sentinel, SpecialUsers, import_object

ALL_ACCESS = Sentinel("ALL_ACCESS")
ALL_SCOPES = set(SCOPES)
PUBLIC_SCOPES = {"read:metadata", "read:data"}
NO_ACCESS = Sentinel("NO_ACCESS")


Expand Down
4 changes: 2 additions & 2 deletions tiled/client/container.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@
from ..adapters.utils import IndexersMixin
from ..iterviews import ItemsView, KeysView, ValuesView
from ..queries import KeyLookup
from ..query_registration import query_registry
from ..query_registration import default_query_registry
from ..structures.core import Spec, StructureFamily
from ..structures.data_source import DataSource
from ..utils import UNCHANGED, OneShotCachedMap, Sentinel, node_repr, safe_json_dump
Expand Down Expand Up @@ -1205,7 +1205,7 @@ def _queries_to_params(*queries):
"Compute GET params from the queries."
params = collections.defaultdict(list)
for query in queries:
name = query_registry.query_type_to_name[type(query)]
name = default_query_registry.query_type_to_name[type(query)]
for field, value in query.encode().items():
if value is not None:
params[f"filter[{name}][condition][{field}]"].append(value)
Expand Down
26 changes: 16 additions & 10 deletions tiled/config.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,19 +10,21 @@
from datetime import timedelta
from functools import cache
from pathlib import Path
from typing import Optional

import jsonschema

from .adapters.mapping import MapAdapter
from .media_type_registration import (
compression_registry as default_compression_registry,
CompressionRegistry,
SerializationRegistry,
default_compression_registry,
default_deserialization_registry,
default_serialization_registry,
)
from .media_type_registration import (
serialization_registry as default_serialization_registry,
)
from .query_registration import query_registry as default_query_registry
from .query_registration import QueryRegistry, default_query_registry
from .utils import import_object, parse, prepend_to_sys_path
from .validation_registration import validation_registry as default_validation_registry
from .validation_registration import ValidationRegistry, default_validation_registry


@cache
Expand All @@ -40,10 +42,11 @@ def construct_build_app_kwargs(
config,
*,
source_filepath=None,
query_registry=None,
compression_registry=None,
serialization_registry=None,
validation_registry=None,
query_registry: Optional[QueryRegistry] = None,
compression_registry: Optional[CompressionRegistry] = None,
serialization_registry: Optional[SerializationRegistry] = None,
deserialization_registry: Optional[SerializationRegistry] = None,
validation_registry: Optional[ValidationRegistry] = None,
):
"""
Given parsed configuration, construct arguments for build_app(...).
Expand All @@ -61,6 +64,8 @@ def construct_build_app_kwargs(
query_registry = default_query_registry
if serialization_registry is None:
serialization_registry = default_serialization_registry
if deserialization_registry is None:
deserialization_registry = default_deserialization_registry
if compression_registry is None:
compression_registry = default_compression_registry
if validation_registry is None:
Expand Down Expand Up @@ -220,6 +225,7 @@ def construct_build_app_kwargs(
"server_settings": server_settings,
"query_registry": query_registry,
"serialization_registry": serialization_registry,
"deserialization_registry": deserialization_registry,
"compression_registry": compression_registry,
"validation_registry": validation_registry,
"tasks": {
Expand Down
16 changes: 8 additions & 8 deletions tiled/media_type_registration.py
Original file line number Diff line number Diff line change
Expand Up @@ -197,21 +197,21 @@ def __call__(self, media_type, encoder, *args, **kwargs):
return self.dispatch(media_type, encoder)(*args, **kwargs)


serialization_registry = SerializationRegistry()
default_serialization_registry = SerializationRegistry()
"Global serialization registry. See Registry for usage examples."

deserialization_registry = SerializationRegistry()
default_deserialization_registry = SerializationRegistry()
"Global deserialization registry. See Registry for usage examples."

compression_registry = CompressionRegistry()
default_compression_registry = CompressionRegistry()
"Global compression registry. See Registry for usage examples."


for media_type in [
"application/json",
"application/x-msgpack",
]:
compression_registry.register(
default_compression_registry.register(
media_type,
"gzip",
lambda buffer: gzip.GzipFile(mode="wb", fileobj=buffer, compresslevel=9),
Expand All @@ -225,7 +225,7 @@ def __call__(self, media_type, encoder, *args, **kwargs):
"text/plain",
"text/html",
]:
compression_registry.register(
default_compression_registry.register(
media_type,
"gzip",
# Use a lower compression level. High compression is extremely slow
Expand Down Expand Up @@ -270,7 +270,7 @@ def close(self):
"text/html",
"text/plain",
]:
compression_registry.register(media_type, "zstd", ZstdBuffer)
default_compression_registry.register(media_type, "zstd", ZstdBuffer)

if modules_available("lz4"):
import lz4
Expand Down Expand Up @@ -326,7 +326,7 @@ def close(self):
"text/html",
"text/plain",
]:
compression_registry.register(media_type, "lz4", LZ4Buffer)
default_compression_registry.register(media_type, "lz4", LZ4Buffer)

if modules_available("blosc2"):
import blosc2
Expand Down Expand Up @@ -355,4 +355,4 @@ def close(self):
pass

for media_type in ["application/octet-stream", APACHE_ARROW_FILE_MIME_TYPE]:
compression_registry.register(media_type, "blosc2", BloscBuffer)
default_compression_registry.register(media_type, "blosc2", BloscBuffer)
4 changes: 2 additions & 2 deletions tiled/query_registration.py
Original file line number Diff line number Diff line change
Expand Up @@ -79,8 +79,8 @@ def inner(cls):


# Make a global registry.
query_registry = QueryRegistry()
register = query_registry.register
default_query_registry = QueryRegistry()
register = default_query_registry.register
"""Register a new type of query."""


Expand Down
15 changes: 15 additions & 0 deletions tiled/scopes.py
Original file line number Diff line number Diff line change
Expand Up @@ -19,3 +19,18 @@
"description": "Edit list of all users and services and their attributes."
},
}

ALL_SCOPES: set[str] = frozenset(SCOPES)
PUBLIC_SCOPES: set[str] = frozenset(("read:metadata", "read:data"))
USER_SCOPES: set[str] = frozenset(
(
"read:metadata",
"read:data",
"write:metadata",
"write:data",
"create",
"register",
"metrics",
)
)
NO_SCOPES: set[str] = frozenset()
39 changes: 25 additions & 14 deletions tiled/serialization/array.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,10 @@

import numpy

from ..media_type_registration import deserialization_registry, serialization_registry
from ..media_type_registration import (
default_deserialization_registry,
default_serialization_registry,
)
from ..utils import (
SerializationError,
UnsupportedShape,
Expand All @@ -22,13 +25,13 @@ def as_buffer(array, metadata):
return numpy.asarray(array).tobytes()


serialization_registry.register(
default_serialization_registry.register(
"array",
"application/octet-stream",
as_buffer,
)
if modules_available("orjson"):
serialization_registry.register(
default_serialization_registry.register(
"array",
"application/json",
lambda array, metadata: safe_json_dump(array),
Expand All @@ -43,10 +46,12 @@ def serialize_csv(array, metadata):
return file.getvalue().encode()


serialization_registry.register("array", "text/csv", serialize_csv)
serialization_registry.register("array", "text/x-comma-separated-values", serialize_csv)
serialization_registry.register("array", "text/plain", serialize_csv)
deserialization_registry.register(
default_serialization_registry.register("array", "text/csv", serialize_csv)
default_serialization_registry.register(
"array", "text/x-comma-separated-values", serialize_csv
)
default_serialization_registry.register("array", "text/plain", serialize_csv)
default_deserialization_registry.register(
"array",
"application/octet-stream",
lambda buffer, dtype, shape: numpy.frombuffer(buffer, dtype=dtype).reshape(shape),
Expand Down Expand Up @@ -90,10 +95,10 @@ def array_from_buffer_PIL(buffer, format, dtype, shape):
image = Image.open(file, format=format)
return numpy.asarray(image).asdtype(dtype).reshape(shape)

serialization_registry.register(
default_serialization_registry.register(
"array", "image/png", lambda array, metadata: save_to_buffer_PIL(array, "png")
)
deserialization_registry.register(
default_deserialization_registry.register(
"array",
"image/png",
lambda buffer, dtype, shape: array_from_buffer_PIL(buffer, "png", dtype, shape),
Expand All @@ -120,18 +125,24 @@ def save_to_buffer_tifffile(array, metadata):
imwrite(file, normalized_array)
return file.getbuffer()

serialization_registry.register("array", "image/tiff", save_to_buffer_tifffile)
deserialization_registry.register("array", "image/tiff", array_from_buffer_tifffile)
default_serialization_registry.register(
"array", "image/tiff", save_to_buffer_tifffile
)
default_deserialization_registry.register(
"array", "image/tiff", array_from_buffer_tifffile
)


def serialize_html(array, metadata):
"Try to display as image. Fall back to CSV."
try:
png_data = serialization_registry.dispatch("array", "image/png")(
png_data = default_serialization_registry.dispatch("array", "image/png")(
array, metadata
)
except Exception:
csv_data = serialization_registry.dispatch("array", "text/csv")(array, metadata)
csv_data = default_serialization_registry.dispatch("array", "text/csv")(
array, metadata
)
return "<html>" "<body>" f"{csv_data.decode()!s}" "</body>" "</html>"
else:
return (
Expand All @@ -145,4 +156,4 @@ def serialize_html(array, metadata):
)


serialization_registry.register("array", "text/html", serialize_html)
default_serialization_registry.register("array", "text/html", serialize_html)
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