Support Modules: panoply_nmf_assemble_results

panoply_nmf_assemble_results

Description

This module compiles the outputs of multiple panoply_nmf_internal_workflow workflow-runs into a single results tar and a single reports tar.

Input

• Multi-omic NMF results (if run)

  • mo_nmf_results: (File) Tar file containing results of panoply_nmf
  • mo_nmf_figures: (File) Tar file containing figures and analyses from panoply_nmf_postprocess
  • mo_nmf_report: (File) Summary report of NMF clustering pipeline.
  • mo_nmf_ssgsea_tar: (File) Results of panoply_ssgsea applied to the NMF results.
  • mo_nmf_ssgsea_report: (File) Summary report of ssGSEA applied to the NMF results.

• Single-omic NMF results (if run)

  • so_nmf_results: (Array[File]) Tar files containing results of panoply_nmf
  • so_nmf_figures: (Array[File]) Tar files containing figures and analyses from panoply_nmf_postprocess
  • so_nmf_report: (Array[File]) Summary reports of NMF clustering pipeline.
  • so_nmf_ssgsea_tar: (Array[File]) Results of panoply_ssgsea applied to the NMF results.
  • so_nmf_ssgsea_report: (Array[File]) Summary reports of ssGSEA applied to the NMF results.

• Sankey Results (if run)

  • sankey_tar: (File) Tar file containing sankey diagram results of panoply_sankey
  • sankey_report: (File) Summary reports of sankey-diagram comparisons from panoply_sankey_report

• output_results_tar: (String, default = "nmf_results.tar.gz") output .tar.gz file name

• output_reports_tar: (String, default = "nmf_reports.tar.gz") output .tar.gz file name

Output

• nmf_results: (nmf_resuls.tar) Tarred results of NMF clustering and GSEA analysis, from all NMF runs (single-omic and multi-omic). Also contains sankey diagrams (if run).
• nmf_reports: (nmf_reports.tar) Tarred reports for NMF clustering and GSEA analysis, from all NMF runs (single-omic and multi-omic). Also contains sankey diagrams (if run).