Add per-variant constraint utility functions#824

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jkgoodrich wants to merge 28 commits intomainfrom

jg/add_functions_for_per_base_constraint

Commits on Feb 7, 2025

Merge branch 'jg/determine_end_trunc_filter_from_gerp' of https://github.com/broadinstitute/gnomad_methods
jkgoodrich
committed

Commits on Mar 10, 2025

Add several functions that are helpful for per base constraint
jkgoodrich
committed

Commits on Mar 12, 2025

Commits on Mar 13, 2025

modify `transform_grch38_methylation` to handle par regions in the same way as autosomes
jkgoodrich
committed

Commits on Mar 14, 2025

Commits on Sep 10, 2025

Keep additional annotations in vep: "sift_score", "polyphen_score", "domains", "uniprot_isoform"
jkgoodrich
committed

Commits on Sep 11, 2025

Add several functions that are helpful for per base constraint
jkgoodrich
committed

Commits on Sep 15, 2025

Merge branch 'main' of https://github.com/broadinstitute/gnomad_methods into jg/add_functions_for_per_base_constraint
jkgoodrich
committed

Commits on Sep 24, 2025

Commits on Jan 7, 2026

add codons to vep annotations to keep
jkgoodrich
committed

Commits on Feb 15, 2026

Merge branch 'main' into jg/add_functions_for_per_base_constraint

jkgoodrich
and
cursoragent
committed

Commits on Mar 17, 2026

Commits on Mar 18, 2026

Commits on Mar 19, 2026

Refactor rank_array_element_metrics to restore original keys and improve rank annotation handling
jkgoodrich
committed

Commits on Mar 23, 2026