TSPS-797 check in glimpse pipeline#1788
Merged
jsotobroad merged 24 commits intodevelopfrom Mar 4, 2026
Merged
Conversation
jsotobroad
force-pushed
the
js_TSPS-797_bcftools_glimpse
branch
from
f87dc9a to
275570c
Compare
|
Remember to squash merge! |
🔍Changelog Validation Results: |
🔍Version Validation Results: |
jsotobroad
force-pushed
the
js_TSPS-797_bcftools_glimpse
branch
from
28e4d32 to
4849127
Compare
|
Remember to squash merge! |
🔍Version Validation Results: |
🔍Changelog Validation Results: |
MatthewBemis
approved these changes
Mar 4, 2026
mmorgantaylor
approved these changes
Mar 4, 2026
Member
mmorgantaylor
left a comment
mmorgantaylor
left a comment
There was a problem hiding this comment.
looks good, one question about the workflow name in case we want to do it now vs later
| @@ -0,0 +1,714 @@ | |||
| version 1.0 | |||
|
|
|||
| workflow Glimpse2Imputation { | |||
Member
There was a problem hiding this comment.
do we want to call this Glimpse2LowpassImputation to distinguish from SVs eventually?
Contributor
Author
There was a problem hiding this comment.
yea that amkes sense, i will also rename the folder
jsotobroad
force-pushed
the
js_TSPS-797_bcftools_glimpse
branch
from
4849127 to
25e9618
Compare
|
Remember to squash merge! |
🔍Changelog Validation Results: |
🔍Version Validation Results: |
|
Remember to squash merge! |
🔍Changelog Validation Results: |
🔍Version Validation Results: |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
4 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Description
This is the first commit for the glimpse pipeline teaspoons will use as part of its low pass genome pipeline. Still very unoptimized but will give the team a common place to work from.
https://broadworkbench.atlassian.net/browse/TSPS-797
Workflow running off of this workflow - https://app.terra.bio/#workspaces/allofus-drc-imputation/Imputation_Server_Hydrogen_Dev/submission_history/783489d6-11de-46f9-b4ff-6e21790be8a1
Checklist
If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP team by tagging @broadinstitute/warp-admins in a comment on this PR.