TSPS-797 check in glimpse pipeline#1788

Merged

jsotobroad merged 24 commits intodevelopfrom

js_TSPS-797_bcftools_glimpse

Mar 4, 2026

Commits on Mar 4, 2026

ricky's glimpse from rm_glimpse_memory branch in palantir-workflows repo

mmorgantaylor
authored and
Jose Soto
committed
add glimpse wdl to dockstore

mmorgantaylor
authored and
Jose Soto
committed
use mem_gb_phase first

mmorgantaylor
authored and
Jose Soto
committed
add changelog

mmorgantaylor
authored and
Jose Soto
committed
initial bcftools wdl
Jose Soto
committed
make wdl able to run on contigs
Jose Soto
committed
fix spacing on task commands from pasting
Jose Soto
committed
run resource parameter task always for testing
Jose Soto
committed
use memory from resource task
Jose Soto
committed
hardcode resource task to use 1 cpu
Jose Soto
committed
set threads to use to 1 as well
Jose Soto
committed
set sites in chunk task to default 1 cpu and 6 gb of mem
Jose Soto
committed
merge should not be preemptible and make resouces better
Jose Soto
committed
ligate less resources and not preemptible
Jose Soto
committed
more disk space for bcftools merge
Jose Soto
committed
increase disk for bcftools merge
Jose Soto
committed
remove task specific monitoring logs
Jose Soto
committed
Glimpse wdl we are going with for now
Jose Soto
committed
set defaults for values we've tested thus far
Jose Soto
committed
add pipeline_version for warp
Jose Soto
committed
Updated pipeline_versions.txt with all pipeline version information

actions-user
authored and
Jose Soto
committed
rename glimpse low pass imputation wdl
Jose Soto
committed
Updated pipeline_versions.txt with all pipeline version information
actions-user
committed
need to rerun pr tests
Jose Soto
committed