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cellxgene-schema CLI must update disease_ontology_term_id and disease to support multiple values

6.0Next major CELLxGENE schema versionNext major CELLxGENE schema version

curation software

Status: Open.

#1289 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 7, 2025

Multiome: Generate chromosome length from fasta files.

curation software

discovery

Status: Open.

#1285 In chanzuckerberg/single-cell-curation;

· Bento007 opened on Mar 5, 2025

Multiome: using incorrect chromosome table returns an ambiguous pandas exception rather than a validation error message

bugSomething isn't workingSomething isn't working

Status: Open.

#1283 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 4, 2025

Multiome: negative values in the fifth_column must fail validation

bugSomething isn't workingSomething isn't working

curation software

techTech issues that do not require product prioritization. Tech debt, tooling, ops, etc.Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.

Status: Open.

#1282 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 4, 2025

Multiome: incorrect types in fragment columns return ambiguous pandas exception rather than a validation error message

bugSomething isn't workingSomething isn't working

curation software

techTech issues that do not require product prioritization. Tech debt, tooling, ops, etc.Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.

Status: Open.

#1281 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 4, 2025

Mulitome: unsupported organism_ontology_term_id returns an ambiguous KeyError rather than a validation error message

bugSomething isn't workingSomething isn't working

curation software

techTech issues that do not require product prioritization. Tech debt, tooling, ops, etc.Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.

Status: Open.

#1280 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 4, 2025

Multiome: include paired/unpaired assay check in process-fragment instead of as a separate cli command

curation software

techTech issues that do not require product prioritization. Tech debt, tooling, ops, etc.Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.

Status: Open.

#1279 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 4, 2025

Multiome: anndata validation should occur before fragment file validation

curation software

techTech issues that do not require product prioritization. Tech debt, tooling, ops, etc.Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.

Status: Open.

#1278 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 4, 2025

Multiome: validation error messages are "lost in all the output"

curation software

techTech issues that do not require product prioritization. Tech debt, tooling, ops, etc.Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.

Status: Open.

#1277 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Mar 4, 2025

Restore genetic ancestry

6.0Next major CELLxGENE schema versionNext major CELLxGENE schema version

blocked

schemaCELLxGENE Discover dataset schemaCELLxGENE Discover dataset schema

Status: Open.

#1265 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Feb 25, 2025

R API notebooks rendering issues

bugSomething isn't workingSomething isn't working

docsImprovements or additions to documentationImprovements or additions to documentation

techTech issues that do not require product prioritization. Tech debt, tooling, ops, etc.Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.

Status: Open.

#1264 In chanzuckerberg/single-cell-curation;

· ivirshup opened on Feb 24, 2025

Breaking Change: update the requirements for feature_name annotation

6.0Next major CELLxGENE schema versionNext major CELLxGENE schema version

draftingdrafting schema requirementsdrafting schema requirements

schemaCELLxGENE Discover dataset schemaCELLxGENE Discover dataset schema

Status: Open.

#1254 In chanzuckerberg/single-cell-curation;

· brianraymor opened on Feb 11, 2025