Hooke cannot be installed on Windows #32
Description
I can install monocle3 and PLN, but when I try installing the Hooke on Windows, it gives me this error:
> devtools::install_github("cole-trapnell-lab/hooke")
Using GitHub PAT from the git credential store.
Downloading GitHub repo cole-trapnell-lab/hooke@HEAD
Skipping 5 packages not available: Rgraphviz, S4Vectors, BiocGenerics, batchelor, Biobase
── R CMD build ───────────────────────────────────────────────────────────────────────────────────
✔ checking for file 'C:\Users\Katarina\AppData\Local\Temp\RtmpeCN4pp\remotes7b3816fe4afe\cole-trapnell-lab-hooke-bdfd56e/DESCRIPTION' ...
─ preparing 'hooke':
✔ checking DESCRIPTION meta-information ...
─ cleaning src
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
Omitted 'LazyData' from DESCRIPTION
─ building 'hooke_0.0.1.tar.gz'
Installing package into ‘C:/Users/Katarina/AppData/Local/R/win-library/4.4’
(as ‘lib’ is unspecified)
* installing *source* package 'hooke' ...
** using staged installation
** libs
no DLL was created
ERROR: compilation failed for package 'hooke'
* removing 'C:/Users/Katarina/AppData/Local/R/win-library/4.4/hooke'
Warning message:
In i.p(...) :
installation of package ‘C:/Users/Katarina/AppData/Local/Temp/RtmpeCN4pp/file7b386895237f/hooke_0.0.1.tar.gz’ had non-zero exit statussessionInfo()
R version 4.4.1 (2024-06-14 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 22631)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
time zone: America/Los_Angeles
tzcode source: internal
attached base packages:
[1] grid stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] Rgraphviz_2.48.0 graph_1.82.0 PLNmodels_1.2.1
[4] monocle3_1.3.7 SingleCellExperiment_1.26.0 SummarizedExperiment_1.34.0
[7] GenomicRanges_1.56.1 GenomeInfoDb_1.40.1 IRanges_2.38.1
[10] S4Vectors_0.42.1 MatrixGenerics_1.16.0 matrixStats_1.3.0
[13] Biobase_2.64.0 BiocGenerics_0.50.0
loaded via a namespace (and not attached):
[1] gridExtra_2.3 remotes_2.5.0 rlang_1.1.4
[4] magrittr_2.0.3 compiler_4.4.1 callr_3.7.6
[7] vctrs_0.6.5 stringr_1.5.1 profvis_0.3.8
[10] pkgconfig_2.0.3 crayon_1.5.3 fastmap_1.2.0
[13] XVector_0.44.0 ellipsis_0.3.2 utf8_1.2.4
[16] promises_1.3.0 sessioninfo_1.2.2 UCSC.utils_1.0.0
[19] ps_1.7.7 nloptr_2.1.1 torch_0.13.0
[22] purrr_1.0.2 bit_4.0.5 zlibbioc_1.50.0
[25] cachem_1.1.0 jsonlite_1.8.8 later_1.3.2
[28] DelayedArray_0.30.1 parallel_4.4.1 R6_2.5.1
[31] stringi_1.8.4 parallelly_1.37.1 boot_1.3-30
[34] pkgload_1.4.0 Rcpp_1.0.12 future.apply_1.11.2
[37] usethis_2.2.3 pscl_1.5.9 httpuv_1.6.15
[40] Matrix_1.7-0 splines_4.4.1 igraph_2.0.3
[43] tidyselect_1.2.1 rstudioapi_0.16.0 abind_1.4-5
[46] codetools_0.2-20 miniUI_0.1.1.1 curl_5.2.1
[49] processx_3.8.4 listenv_0.9.1 pkgbuild_1.4.4
[52] lattice_0.22-6 tibble_3.2.1 plyr_1.8.9
[55] shiny_1.8.1.1 glassoFast_1.0.1 desc_1.4.3
[58] future_1.33.2 urlchecker_1.0.1 pillar_1.9.0
[61] corrplot_0.92 generics_0.1.3 ggplot2_3.5.1
[64] munsell_0.5.1 scales_1.3.0 coro_1.0.4
[67] minqa_1.2.7 globals_0.16.3 xtable_1.8-4
[70] glue_1.7.0 tools_4.4.1 lme4_1.1-35.5
[73] fs_1.6.4 tidyr_1.3.1 devtools_2.4.5
[76] colorspace_2.1-0 nlme_3.1-164 GenomeInfoDbData_1.2.12
[79] cli_3.6.3 fansi_1.0.6 S4Arrays_1.4.1
[82] dplyr_1.1.4 gtable_0.3.5 digest_0.6.36
[85] SparseArray_1.4.8 htmlwidgets_1.6.4 memoise_2.0.1
[88] htmltools_0.5.8.1 lifecycle_1.0.4 httr_1.4.7
[91] mime_0.12 bit64_4.0.5 MASS_7.3-60.2