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visualization for abundance changes in general

Status: Open.

#43 In cole-trapnell-lab/hooke;

· dana-jackson opened on Aug 6, 2025

only run multiple testing correction on power > 0.8

Status: Open.

#38 In cole-trapnell-lab/hooke;

· eliza-barkan opened on May 28, 2025

convert output to set log scale

Status: Open.

#37 In cole-trapnell-lab/hooke;

· eliza-barkan opened on May 28, 2025

Hooke cannot be installed on Windows

Status: Open.

#32 In cole-trapnell-lab/hooke;

· kvlajic opened on Jul 16, 2024

Can't navigate Github pages documentation when window is too small

Status: Open.

#31 In cole-trapnell-lab/hooke;

· rfriedman22 opened on May 7, 2024

write a combine_ccs function

Status: Open.

#28 In cole-trapnell-lab/hooke;

· maddyduran opened on Feb 2, 2024

distinguish between loss of abundance + not detectable abundance

Status: Open.

#25 In cole-trapnell-lab/hooke;

· maddyduran opened on Jan 18, 2024

boolean columns in colData(cds) get lost in colData(ccs)

Status: Open.

#20 In cole-trapnell-lab/hooke;

· maddyduran opened on Nov 1, 2023

Lowly abundant cell types have highest delta abundance

Status: Open.

#17 In cole-trapnell-lab/hooke;

· crostomily opened on Feb 10, 2023

To make: perturbation by perturbation scatterplot function

Status: Open.

#16 In cole-trapnell-lab/hooke;

· maddyduran opened on Feb 9, 2023

if a cell type completely disappears in a perturbation, hooke misses it/calls the cell type 'no change' in abundance

Status: Open.

#15 In cole-trapnell-lab/hooke;

· eliza-barkan opened on Jan 11, 2023

plot_contrast fails if no edges in graph

Status: Open.

#13 In cole-trapnell-lab/hooke;

· maddyduran opened on Nov 1, 2022