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Add ChatSpatial: MCP server for spatial transcriptomics #10

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Add mLLMCelltype: Cell type annotation tool using multiple LLMs
cafferychen777 Jul 23, 2025
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Add ChatSpatial: MCP server for spatial transcriptomics
cafferychen777 Mar 9, 2026
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Expand Up @@ -33,6 +33,8 @@ Have fun!
* GPT-based chatbot fine-tuned for bioinformatics https://ai.tinybio.cloud/chat (discussed on [Biostars](https://www.biostars.org/p/9565757/))
* Very powerful question answering using GPT and internet searches: https://www.perplexity.ai/
* Python framework for connecting conversational AI to bioinformatics pipelines https://github.com/biocypher/biochatter and [ChatGSE](https://chat.biocypher.org)
* mLLMCelltype: Cell type annotation for single-cell RNA-seq using multiple LLMs https://github.com/cafferychen777/mLLMCelltype
* ChatSpatial: MCP server enabling spatial transcriptomics analysis via natural language conversation. Integrates 60+ methods across Python and R into a single conversational workflow. https://github.com/cafferychen777/ChatSpatial ([Paper](https://doi.org/10.64898/2026.02.26.708361))

## Prompt Engineering

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