Captus v1.5.8

Changes in captus extract:

• New option called --cl_rep_single allows the creation of a target file from contig clustering that contains a single sequence representative per cluster. This is useful if one plans to map back the reads to the target file.

Changes in extra scripts:

• most_common_target_per_locus is now faster and can also process Captus extractions directories or Captus alignments directories. A number of min_samples can be chosen.
• concatenate_alignments and phylo_commands now can process a file with a list of paths to the alignments instead of only allowing to search the Captus alignments directory.
• Added wrappers for all extra scripts so they can be ran even if Captus is not installed (ending in -runner.py)