v0.15.0

Added

• StatusTable component to track sample status.
• stacked_freq_bar for visualising stacked_freqs as colours in a bar.
• value_badge for visualising a value, with background colour based on the value and assigned thresholds.
• OND report demo added to tests.

Changed

• LeadSummary and lead_section_table can optionally display a custom string for None values when fill_none is specified, otherwise preserves existing behavior of hiding them.
• ConfigurationTable now supports a fill_none option to display a custom string for None or empty values; defaults to original behavior if not set.
• ond.scss colour and name changes for badges-undertermined to badge-no_result to reflect new categories in workflows.
• Long values in ConfigurationTable, LeadSummary, and lead_section_table are now automatically wrapped to improve table readability.
• ONDReport no longer requires paths for workflow params and versions, as they can be provided via the workflow model.

Fixed

• ConfigurationTable no longer display False, 0, and other falsy values as an empty string.

v0.14.1

Fixed

• LeadSummary balances columns aware of None values.
• Reports now include Arial and Sans-serif font options, to improve appearance when Noto Sans is unavailable.

v0.14.0

Changed

• Percentage of reads aligned histogram x-axis limits are now default 0 to 100.
• Accuracy histogram x-axis limits are now default 80 to 100.

Added

• Download button in sankey plot.
• DataTables.from_pandas takes use_headers kwarg.
• DataTables sortable added to API.
• DetailsTable, LeadSummary, WorkflowQCBanner components for reports.
• Added page_number attribute to the report, which if True adds a styled footer to the report containing the page number.
• Add make_table to create QC control checks tables.

Fixed

• Sankey now scales down until it hits 800px, it then scrolls. This avoids overflowing the right of the screen on narrow viewports.
• Sequence summary read length N50 incorrectly displayed minimum read length, it now correctly shows the N50.
• Sequence summary component alignment and coverage plots amended to also work with histogram data as input, example added to demo. [CW-5838]

v0.13.1

Fixed

• SeqSummary read_length_plot_binwidth override not working in v.13.0.

v0.13.0

Changed

• Updated relational plot APIs: Now support bokeh_kwargs, allowing customization of bokeh.figure during initialization.
• ONT style update with re-branding
• MSA start:end now uses bed file format

Added

• Read length plot x-axis initial range max can be set with read_length_quantile_xend.

v0.12.0

Added

• si_format function for formatting numbers.
• SeqSummary histograms show a warning when no aligned reads to plot.
• Added parameter to set data type in read_files.

Changed

• Reports have a maximum width.
• Boxplot hover shows summary stats.
• SeqSummary histograms' axis defaults increased to be inclusive of maximum values.

Fixed

• Regression squishing ECharts plots when a different tab is selected.
• SeqSummary histograms' median value no longer converted to an integer.
• SeqSummary min axis range works when set to 0.
• Boxplots can be made with a single array of values.
• Boxplot colours now cycle through the palette for large datasets.
• Icons on pass, fail and unknown badges have a fixed position to prevent overlapping with text.

v0.11.5

Fixed

• ValueError: invalid literal for int() with base 10 in base_yield_plot

Changed

• Clarify SeqSummary read alignment title and axis label.

v0.11.4

Fixed

• Added setuptools to conda package requirements to unbreak package distribution.

Added

• Added setuptools to python package requirements as it is required for runtime use of pkg_resources.

v0.11.3

Fixed

• load_modkit_summary function shows the threshold value of any modified base.

Changed

• SeqSummary dropdown menu shows samples in order.
• Seqviz plot now displays enzymes in a multi-select box.

Added

• additional_styles dictionary parameter to allow more style options of div in EZchart()
• SeqSummary read_length_plot binwidth can be overridden from default.

v0.11.2

Changed

• Bokeh plots featuring more than one data series will automatically have a legend.

Fixed

• Tooltips not displaying meaningful values.