v2.10.0

Changed

• The workflow now uses the fastcat read length and quality histograms instead of the per-read stats in the report process.

Added

• Output IGV configuration file if the keep_bam option is enabled and a custom reference is provided (in minimap2 mode).
• Output reduced reference file if the keep_bam option is enabled (in minimap2 mode).
• abundance_threshold reduces the number of references to be displayed in IGV.

Fixed

• Complete previous taxonomic rank when there are no parent nodes.
• Checking the correspondence between the reference and ref2taxid now also works with compressed references.
• exclude-host can input a file in the EPI2ME Desktop Application.