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nh13msto
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Update src/main/scala/com/fulcrumgenomics/bam/SortBam.scala
Co-authored-by: Matt Stone <[email protected]>
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src/main/scala/com/fulcrumgenomics/bam/SortBam.scala

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@@ -41,7 +41,7 @@ import com.fulcrumgenomics.util.Io
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|and several
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|4. **RandomQuery**: sorts the reads into a random order but keeps reads with the same
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| queryname together. The ordering is deterministic for any given input.
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|5. **TemplateCoordinate**: sorts the reads The sort order used by `GroupReadByUmi`. Sorts reads by
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|5. **TemplateCoordinate**: The sort order used by `GroupReadByUmi`. Sorts reads by
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| the earlier unclipped 5' coordinate of the read pair, the higher unclipped 5' coordinate of the
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| read pair, library, the molecular identifier (MI tag), read name, and if R1 has the lower
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| coordinates of the pair.

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