Skip to content

Pull requests: fulcrumgenomics/fgbio

New pull request New
16 Open 691 Closed
16 Open 691 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

feat: allow variable length UMIs
#1148 opened Mar 24, 2026 by TimD1 Contributor Loading…
23
fix: remove explicit ref from docs job checkout to support fork PRs
#1126 opened Dec 17, 2025 by nh13 Member Loading…
3
Personal tool for computing genotype call rate with a GQ minimum.
#1107 opened Oct 26, 2025 by tfenne Member Loading…
@yfarjoun
3
Personal tool to split up large intervals in an interval list.
#1100 opened Sep 29, 2025 by tfenne Member Loading…
@yfarjoun
7
feat: add a web-page to parse an NCBI assembly report
#1066 opened May 19, 2025 by nh13 Member • Draft
4 tasks
feat: add a a read name filtering writer to the API
#1037 opened Feb 28, 2025 by nh13 Member • Draft
@nh13
1
feat: a default base quality may be provided in consensus callers whe… enhancement
#1032 opened Feb 20, 2025 by nh13 Member • Draft
1
@nh13
2
feat: add optical duplicate tagging to GroupReadsByUmi
#1029 opened Feb 16, 2025 by yfarjoun Contributor • Draft
1
@yfarjoun
1
WIP: POC of a tool to re-pick primary alignments.
#1012 opened Sep 23, 2024 by tfenne Member • Draft
1
feat: FastqToBam can extract UMI(s) from the comment in the read name
#989 opened May 20, 2024 by nh13 Member Loading…
@nh13 @clintval
16
Remove VariantContexts from most fgbio tools help wanted
#836 opened Apr 29, 2022 by kstromhaug Loading…
1
Remove VariantContexts and other HTSJDK classes from HapCutToVcf and tests help wanted
#832 opened Apr 25, 2022 by kstromhaug Loading…
3
Remove uses of VariantContextSetBuilder in all unit tests
#819 opened Mar 28, 2022 by kstromhaug • Draft
1
Add scala implementations for some SamRecord methods
#809 opened Mar 10, 2022 by nh13 Member Loading…
@tfenne
47
Add source classes for BED and generic Interval types
#665 opened Feb 28, 2021 by clintval Member Loading…
@tfenne
2
Adding a tool to left-align indels help wanted
#539 opened Oct 15, 2019 by nh13 Member Loading…
@clintval
18
ProTip! Type g i on any issue or pull request to go back to the issue listing page.