Search results

Return pairs in ReviewConsensusVariants

question

Status: Open.

#1035 In fulcrumgenomics/fgbio;

· SPPearce opened on Feb 28, 2025

How should we handle missing base qualities in the consensus caller?

question

Status: Open.

#1031 In fulcrumgenomics/fgbio;

· nh13 opened on Feb 20, 2025

Why do we use of hard-clipping when calculating the mate's start and end?

question

Status: Open.

#1030 In fulcrumgenomics/fgbio;

· nh13 opened on Feb 19, 2025

High number of "orphan consensus"

question

Status: Open.

#1015 In fulcrumgenomics/fgbio;

· wiedenhoeft opened on Nov 22, 2024

DuplexConsensusReads min-reads and max-reads-per-strand

question

Status: Open.

#1014 In fulcrumgenomics/fgbio;

· saty89 opened on Oct 24, 2024

GroupReadsByUmi and optical duplicates

question

Status: Open.

#1013 In fulcrumgenomics/fgbio;

· miwalter opened on Oct 14, 2024

UMI Quality

enhancement

help wanted

needs sponsorship

Status: Open.

#1008 In fulcrumgenomics/fgbio;

· prot-devin opened on Aug 22, 2024

GroupReadsByUmi duplicate marking may fail when secondary and supplementary alignments are included

bug

Status: Open.

#961 In fulcrumgenomics/fgbio;

· nh13 opened on Jan 29, 2024

SetMateInformation should add the MQ tag to any supplementary alignments

enhancement

Status: Open.

#960 In fulcrumgenomics/fgbio;

· msto opened on Jan 26, 2024

Support NCBI sequence_report.jsonl as input for CollectAlternateContigNames

enhancement

Status: Open.

#945 In fulcrumgenomics/fgbio;

· ghuls opened on Oct 19, 2023

GroupReadsByUmi "identity" may be unnecessary?

enhancement

help wanted

Status: Open.

#905 In fulcrumgenomics/fgbio;

· eboyden opened on Mar 25, 2023

Write a guide on "so you have UMIs in your data, here's how to get to a standardized BAM" with fgbio

Status: Open.

#890 In fulcrumgenomics/fgbio;

· nh13 opened on Dec 8, 2022