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1 parent 8d31cf3 commit fb3ce46Copy full SHA for fb3ce46
src/main/scala/com/fulcrumgenomics/bam/Bams.scala
@@ -542,7 +542,7 @@ object Bams extends LazyLogging {
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"Input was not queryname sorted or query grouped, found: " +
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s"SO:${header.getSortOrder} GO:${header.getGroupOrder}" +
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Option(header.getAttribute("SS")).map(ss => f" SS:$ss").getOrElse("") +
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- f". Use `samtools sort -n -u in.bam | fgbio $toolName -i /dev/stdin`" +
+ f". Use `samtools sort -n in.bam | fgbio $toolName -i /dev/stdin`" +
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path.map(p => f"\nPath: $p").getOrElse("")
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)
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}
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