fix typo

jdidion · jdidion · commit ff3ab5401d00 · 2024-07-12T17:41:40.000-07:00
diff --git a/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala b/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala
@@ -47,7 +47,7 @@ import com.fulcrumgenomics.util.{Io, ProgressLogger}
     |Some tools (e.g. BCL Convert) may reverse-complement UMIs on R2 and add a prefix to indicate that the sequence
     |has been reverse-complemented.  The `--rc-prefix` option specifies the prefix character(s) and causes them to
     |be removed.  Additionally, if the `--normalize-rc-umis` flag is specified, any reverse-complemented UMIs will
-    |be normalized (i.e., reverse-completemented back to be in the forward orientation).
+    |be normalized (i.e., reverse-complemented back to be in the forward orientation).
     |
     |To obtain behavior similar to `umi_tools`' `--umi-separator=":r"`, specify the delimiter and
     |prefix separately, i.e. `--field-delimiter=":"` and `--rc-prefix="r"`.

Original file line number	Diff line number	Diff line change
`@@ -47,7 +47,7 @@ import com.fulcrumgenomics.util.{Io, ProgressLogger}`
`47`	`47`	`\|Some tools (e.g. BCL Convert) may reverse-complement UMIs on R2 and add a prefix to indicate that the sequence`
`48`	`48`	\|has been reverse-complemented. The `--rc-prefix` option specifies the prefix character(s) and causes them to
`49`	`49`	\|be removed. Additionally, if the `--normalize-rc-umis` flag is specified, any reverse-complemented UMIs will
`50`		`- \|be normalized (i.e., reverse-completemented back to be in the forward orientation).`
	`50`	`+ \|be normalized (i.e., reverse-complemented back to be in the forward orientation).`
`51`	`51`	`\|`
`52`	`52`	\|To obtain behavior similar to `umi_tools`' `--umi-separator=":r"`, specify the delimiter and
`53`	`53`	\|prefix separately, i.e. `--field-delimiter=":"` and `--rc-prefix="r"`.